Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k13
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    31   0.23 
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   5.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.8  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   8.8  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +1

Query: 445 NEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKKITFTTDTILENL 591
           N  I T +V  A    APDI  L      L S  N    FTT+T+ E L
Sbjct: 535 NRTIHTYHVEGAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEEL 583


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 712 SRVHQITHQTKC*TWPKSSLSKSYKTLIIIYSGTLNP--LYFLNSPKLY 572
           +RV+ + H TK  TW    L  S    +  Y        +YFL+ P L+
Sbjct: 359 ARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKRDFRRKLIYFLSQPALH 407


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +1

Query: 31  NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFISNGGST 210
           N    T A +T+  +N   + + N      TN+           A A   + +  N  +T
Sbjct: 63  NNNNNTSAANTNAAYNANTAANANANTATTTNAAATTSAAYNPNAPANTNAAYYPNAAAT 122

Query: 211 VWTNAAPSHK 240
             TNA  S K
Sbjct: 123 TTTNADGSDK 132


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 505 NKLQDMIQDLQSEYNKKITFTTDTILENLKNIK 603
           NK Q+MIQD+ +   ++I   T T +E  +N +
Sbjct: 37  NKSQEMIQDIPARDREEIENITRTFVELQENYR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,852
Number of Sequences: 5004
Number of extensions: 68393
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)