Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k13
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003) 30 2.3
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6) 30 2.3
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 28 7.1
SB_22150| Best HMM Match : Brevenin (HMM E-Value=2.2) 28 9.4
SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2) 28 9.4
>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
Length = 1063
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +1
Query: 343 LKSIISDLLMGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDM 522
+++ + DL + + G + + + +S E S ++ +A++P D + +QD+
Sbjct: 419 METSMKDLSINSMGSALETESVPPSDMALSNDSYIEESSPID--RSADTPTFDDSAIQDV 476
Query: 523 IQDLQSEYNKKITFTTDTILENL-KNIKDLMCLNK 624
+ S+YN T +++E+L ++ KD L++
Sbjct: 477 TRPSSSDYNSFEPLTKTSVVEDLAESSKDASILDQ 511
>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
Length = 642
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/95 (21%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +1
Query: 343 LKSIISDLLMGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDM 522
+++ + DL + + G + + + +S E S ++ +A++P D + +QD+
Sbjct: 274 METSMKDLSINSMGSALETESVPPSDMALSNDSYIEESSPID--RSADTPTFDDSAIQDV 331
Query: 523 IQDLQSEYNKKITFTTDTILENL-KNIKDLMCLNK 624
+ S+YN T +++E+L ++ KD L++
Sbjct: 332 TRPSSSDYNSFEPLTKTSVVEDLAESSKDASILDQ 366
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/88 (25%), Positives = 44/88 (50%)
Frame = +1
Query: 340 VLKSIISDLLMGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQD 519
V K+ + D L G + VF+ L + + ++QE +++ S N+ +N D + +
Sbjct: 1291 VRKTELQDALDGVKS-VFEYLDKTVKRSWSVQECVDKIDSVKNILKTSN----DHSVISS 1345
Query: 520 MIQDLQSEYNKKITFTTDTILENLKNIK 603
+ D+ S +K+ +T L+ +K IK
Sbjct: 1346 QLDDMNSNCLQKLEYTLTCKLDKVKIIK 1373
>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 10 FLSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPF 189
F SG K+ + + +T+N++Y N + + D D D L ++S
Sbjct: 261 FFSGIRKHPLCTRVFRWCGHTYNWVYKLRGNFSISKSQDDDKDFDDVRILNEIDDVISLD 320
Query: 190 ISNGGSTVWTNAAPSHKLIKNNKNY 264
I + ST+ NA + N NY
Sbjct: 321 IFDRDSTILLNAGLHYLESTNFTNY 345
>SB_3584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 484 NSPAPDINKLQDMIQDLQSEYNKKITFTTDTILENLKNI 600
N+ PD K+ I D Q E K++T+T + LK +
Sbjct: 375 NARLPDKQKMIKEILDAQEEIKKRVTYTGNRYFHKLKGM 413
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +1
Query: 367 LMGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEY 546
L +GK+ D L + K +L Q LNEA + + + +N +Q L SE
Sbjct: 1738 LKSEKGKIEDELKDTKKRLTQYQTELNEARTEIR---QKDDVIRKLNYKNSELQTLLSEK 1794
Query: 547 NKKITFTTDTILENLKNIKDLM 612
N + +EN+K + D+M
Sbjct: 1795 NDALKREEKLRMENMKAL-DVM 1815
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 427 AIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQ----SEYNKKITFTTDTILENLK 594
A E L+ ++ N A N+ D+ K ++ Q+LQ S+ NK+++ + +LE +
Sbjct: 604 AQDEELDRQLNINNQINAKNNDEKDLEKELEIAQELQIELKSDRNKRLSHSKKRVLETMA 663
Query: 595 N 597
N
Sbjct: 664 N 664
>SB_22150| Best HMM Match : Brevenin (HMM E-Value=2.2)
Length = 126
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 36 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQ 173
D E+ D++ QL ++ G FGRR R+ + RRR+
Sbjct: 74 DDEDSELADVQGGQLKESDAKEGGRAADPIFGRRRRYYYRRRRRRR 119
>SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)
Length = 334
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 367 LMGAQGKVFDPLCEVKTQLCAIQESLNEAISTL-NVHAAANSPAPDINKLQDMIQDLQSE 543
L GK F+ L ++L A + L++ IS N+H + DI L+ ++ +Q E
Sbjct: 149 LAALNGK-FEQLSSKFSRLQAENQRLSQIISERGNIHTIQSKEEDDIEALKAQVRIIQEE 207
Query: 544 Y--NKKITFTTDTILENLKN 597
Y + I + + I LK+
Sbjct: 208 YETQRAIANSAERINRRLKD 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,227,086
Number of Sequences: 59808
Number of extensions: 506097
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -