Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k13
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022975-8|AAB70667.4|  195|Caenorhabditis elegans Hypothetical ...    36   0.041
AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical ...    31   0.67 
AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical ...    31   0.67 
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AF016430-5|AAB65373.1|  581|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z30662-7|CAA83141.2|  566|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    29   2.7  
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    29   2.7  
U22831-6|AAK20068.1|  579|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF314195-1|AAK01173.1|  820|Caenorhabditis elegans OSM-5 protein.      29   2.7  
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC006761-7|AAF60551.2|  820|Caenorhabditis elegans Osmotic avoid...    29   2.7  
Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    29   3.6  
U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical p...    29   4.7  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    28   6.2  

>AF022975-8|AAB70667.4|  195|Caenorhabditis elegans Hypothetical
           protein K09C6.9 protein.
          Length = 195

 Score = 35.5 bits (78), Expect = 0.041
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = +1

Query: 394 DPLCEVKTQLCAIQESLNEAISTLNVHAAAN---SPAPDINKLQDMIQDLQSEYNKKITF 564
           DP    K + C I  S+N+AI+ +N+++  N   + +  ++KL     +L      K   
Sbjct: 60  DPELVSKAKTCVINNSMNKAIAAMNLYSGFNGCTNLSDLVSKLATPFINLCKPVINKALS 119

Query: 565 TTDTILENLK---NIKDLMCLNK 624
           T DT   N K   N K   C+NK
Sbjct: 120 TLDTCKANNKQTGNAKQTACMNK 142


>AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical
           protein B0273.3 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 51  RPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQNHVTFY*QR--RFDRVDQR 224
           R +D+ H    VF+R+  GG    + G ++  L   +RRR         R  R+D +D R
Sbjct: 64  RQIDVSHISSMVFNREMDGGIERNRLGSQAILLDENSRRRNPQFKSIALRSLRYDHIDHR 123


>AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.1 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 51  RPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRWLFGTNRRRQNHVTFY*QR--RFDRVDQR 224
           R +D+ H    VF+R+  GG    + G ++  L   +RRR         R  R+D +D R
Sbjct: 64  RQIDVSHISSMVFNREMDGGIERNRLGSQAILLDENSRRRNPQFKSIALRSLRYDHIDHR 123


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +1

Query: 373 GAQGKVFDPLCEVKTQLCAIQESLNEAISTL-NVHAAANSPAPDIN--KLQDMIQDLQSE 543
           G QGK  D + E+  ++  ++  +++A+  L +        A D N  K   M+QD+Q  
Sbjct: 455 GMQGKDRDSIIELVMEISGVKGIVHDAMKMLKSTEMPELDLAMDANAKKSLQMVQDIQKS 514

Query: 544 YNKK 555
           YN+K
Sbjct: 515 YNRK 518


>AF016430-5|AAB65373.1|  581|Caenorhabditis elegans Hypothetical
           protein C05C8.6 protein.
          Length = 581

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 373 GAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSP 492
           G Q  +FDPL  V  +L   + S+NE    +++ A +N P
Sbjct: 538 GWQELIFDPLPVVYIRLVGTRNSINEVFHVVHLEAPSNVP 577


>Z30662-7|CAA83141.2|  566|Caenorhabditis elegans Hypothetical
           protein T16H12.6 protein.
          Length = 566

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 558 NFFIVFRLQILYHILQLVNVWRGRV 484
           N   +FRL +LYH    V VWR  V
Sbjct: 157 NIIKIFRLALLYHTTLAVRVWRAMV 181


>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 36  DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 128
           DY +   V I H+ + VF  + + GGH YQF
Sbjct: 25  DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 55


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 36  DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 128
           DY +   V I H+ + VF  + + GGH YQF
Sbjct: 44  DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 74


>U22831-6|AAK20068.1|  579|Caenorhabditis elegans Hypothetical
           protein F47D12.7 protein.
          Length = 579

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 558 NFFIVFRLQILYHILQLVNVWRGRV 484
           N   +FRL +LYH    V VWR  V
Sbjct: 157 NIIKIFRLALLYHTTLAVRVWRSMV 181


>AF314195-1|AAK01173.1|  820|Caenorhabditis elegans OSM-5 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 406 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKK 555
           +V  QL +I ESL ++   + +++ ANS  P+   +   + DL  +   K
Sbjct: 542 QVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDK 591


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +1

Query: 484 NSPAPDINKLQDMIQDLQSEYNKKITFTTDTILENLKNIKD 606
           N    D+++L + I+ ++S YNK   + +++  +N+K + D
Sbjct: 99  NQLVKDVDELHEEIEKMESLYNKPADYASNSYTDNMKLMLD 139


>AC006761-7|AAF60551.2|  820|Caenorhabditis elegans Osmotic
           avoidance abnormal protein5 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 406 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKK 555
           +V  QL +I ESL ++   + +++ ANS  P+   +   + DL  +   K
Sbjct: 542 QVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQEGDK 591


>Z81042-3|CAB02794.2|  660|Caenorhabditis elegans Hypothetical
           protein C27H6.3 protein.
          Length = 660

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 406 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSEYNKKITFTTDTILE 585
           +++ Q+  ++ S+N+ +S         S  P   KL D+    ++E+N    F    I E
Sbjct: 361 QLRNQVYRLESSINQIMSRKCTIRYGTSIMPSFAKLIDVAPPTEAEFNNPCLFPEKRIAE 420

Query: 586 N 588
           N
Sbjct: 421 N 421


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 263 IFMCLVYLNICQITI*IIKNVLKNITFLNRLLATCLW 373
           IF CLV L+   +    + N+L ++   NRL ATC+W
Sbjct: 396 IFTCLVVLSYYGVFFNHLGNILLSV---NRLSATCVW 429


>U29535-11|AAK31456.1|  947|Caenorhabditis elegans Hypothetical
           protein C25H3.11 protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 55  QSTSNTHNFMYSPDNNLEVVIITNSDG---DHDGYLELTAAAK 174
           QST +T +   +P N L VV +T S+G   +H+  LE TA  K
Sbjct: 382 QSTVSTDDSNTNPSNALAVVPVTTSNGASSNHNQSLESTAIMK 424


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 116  MTTSRLLSGEYMKLCVFDVDWA-SVFIIPFL*QPDKNNL 3
            + T  ++ GE  + C+F +  A +V+++P L +P KN L
Sbjct: 1518 LLTESVVKGENSRTCLFGLIRAENVYVLPTLVKPSKNTL 1556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,234,925
Number of Sequences: 27780
Number of extensions: 389141
Number of successful extensions: 939
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)