Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k13
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    31   1.1  
At1g69970.1 68414.m08053 CLE26, putative CLAVATA3/ESR-Related 26...    29   2.5  
At1g16730.1 68414.m02007 expressed protein                             29   2.5  
At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    29   3.3  
At5g45770.1 68418.m05627 leucine-rich repeat family protein cont...    28   5.8  

>At2g33240.1 68415.m04072 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin my5A
            (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +1

Query: 406  EVKTQLCAIQESLNEAISTLNVHAAAN--SPAPDINKLQDMIQDLQSEYN---KKITFTT 570
            +VKTQ     E L  A++ + +       + + +I KLQ  +QD+Q E+    K++  T 
Sbjct: 933  QVKTQEV---EDLRSALNDMKLQLGETQVTKSEEILKLQSALQDMQLEFEELAKELEMTN 989

Query: 571  DTILENLKNIKDLM 612
            D   EN + +KDL+
Sbjct: 990  DLAAEN-EQLKDLV 1002


>At1g69970.1 68414.m08053 CLE26, putative CLAVATA3/ESR-Related 26
           (CLE26);
          Length = 118

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 740 LFLVARYSSVPRTPNNPPNQMLNVAQKFIVEIVQNPYYYL 621
           L  VA    VPR P+   N+ L +  +FI+ ++ NPY YL
Sbjct: 71  LSYVASKRKVPRGPDPIHNRFL-LLSRFILSLLTNPYPYL 109


>At1g16730.1 68414.m02007 expressed protein
          Length = 202

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 343 LKSIISDLLMGAQGKVFDPLCEVKTQLCAIQESLNEAIS 459
           L+  I D    AQG   D L  +KTQL  I  S++ A++
Sbjct: 115 LEGAIKDFAGAAQGMTKDALHRIKTQLAVIVPSVSPAVT 153


>At5g20910.1 68418.m02483 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 478 AANSPAPDINKLQDMIQDLQSEYNKKITF 564
           A++SP+P    L+  + DLQ + NKK+ F
Sbjct: 3   ASSSPSPSEESLKLELDDLQKQLNKKLRF 31


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 551 LLYSDCKSCIISCNLLMSGA 492
           L + DC S  +SCNLLM G+
Sbjct: 127 LNFGDCTSSTVSCNLLMEGS 146


>At5g45770.1 68418.m05627 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 425

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -3

Query: 753 TSIDFISCSSLFKCPAYTK*PTKPNAKRGPKVHCRNRTKPLLLFIQAH*ILYIF*ILQNC 574
           TSI F +CSS    P+ T  P   +       +C + + P  L I  H    +   LQN 
Sbjct: 73  TSISFTNCSSTLSLPSKTLKPLSKSLISLSFTNCPSLSPPYHLPISLHSFSAVSSFLQNN 132

Query: 573 ISGKSNFFI 547
            +  S  F+
Sbjct: 133 RTKLSGLFL 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,988,534
Number of Sequences: 28952
Number of extensions: 353246
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)