Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k10
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.8  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.7  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 474  ARRPPSGNIGKFENIYNWVVCAYLSWRW 391
            + +PP     K ++ Y  +VC + +W W
Sbjct: 1382 SEKPPLPEELKPQSGYFKIVCYFTNWAW 1409


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 513 RTSICTPNDRRAKARRPPSG 454
           ++S+C+P      +R  PSG
Sbjct: 146 KSSVCSPGSGHQDSRTSPSG 165


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 513 RTSICTPNDRRAKARRPPSG 454
           ++S+C+P      +R  PSG
Sbjct: 146 KSSVCSPGSGHQDSRTSPSG 165


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 513 RTSICTPNDRRAKARRPPSG 454
           ++S+C+P      +R  PSG
Sbjct: 146 KSSVCSPGSGHQDSRTSPSG 165


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 623 FVATPLLVVLSLFCAFVESL 682
           F   PL+++L L+C   ++L
Sbjct: 245 FFIIPLIILLILYCIIAKNL 264


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 598 CSASTPEGICSNTTTSC 648
           CS+S P    +N+TT+C
Sbjct: 236 CSSSQPVLSTTNSTTNC 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,083
Number of Sequences: 336
Number of extensions: 3562
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)