Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k10
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0032 - 13953323-13955269                                         30   2.2  
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592     30   2.2  
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    29   5.0  
12_02_0123 - 13930138-13932471                                         28   8.7  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   8.7  

>09_04_0032 - 13953323-13955269
          Length = 648

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 189 KMVSLLKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINR 341
           +M+ LLK A+  T +  E      +   R+  ++D +I+N DV  F+ +++
Sbjct: 598 EMMRLLKLAVECTEQRPERRPTMAEVAARIEHIVDTVIRNADVDDFDSVSQ 648


>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
          Length = 853

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 478 RPTIIRCTDTCALRAARCWLSTTRWTCL--AKRRRASTNYLKCSASTPEGICSNTTTS 645
           R  ++R    C  R  +  L   RW  +  ++ RR S +  +C+A+     CS+  TS
Sbjct: 270 REMLVREVKMCKARRKQAELEADRWRKMWESRHRRGSRSSARCAAAADHPGCSDKLTS 327


>12_01_0797 +
           7300370-7300506,7300682-7300798,7301903-7302443,
           7302885-7304042,7304133-7304291,7304397-7304504,
           7305045-7305304,7305936-7306101,7307025-7307050,
           7307318-7307402,7307486-7307695,7308815-7308872,
           7308964-7309037,7309323-7309373,7309576-7309664,
           7310027-7310104,7310164-7310269
          Length = 1140

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = -3

Query: 599 HFK*FVDALLRFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIG 420
           HFK   D ++RF +H +RVV++++    NA+    R  + R  +   + I A SK+YT  
Sbjct: 369 HFKSDFD-IIRFLQHFERVVEDKRENELNAEFE-SRKKIPRIKMRTPMLIQA-SKLYTPI 425

Query: 419 LF 414
           +F
Sbjct: 426 IF 427


>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
 Frame = +3

Query: 249 IPHFDHLTR---------LRDLIDGMIKNEDVQRFNRINRN 344
           +PHF H  R         LRD  D M KN D+Q F+RI  +
Sbjct: 676 MPHFTHSVRPYGDIFSVNLRDTTD-MAKNRDIQEFHRITHS 715


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 503 ILVRCVRHAAGYRPPVGRVWRN 568
           I+V  V +AAG+ PP G VW+N
Sbjct: 30  IMVATVTYAAGFNPP-GGVWQN 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,057,065
Number of Sequences: 37544
Number of extensions: 360851
Number of successful extensions: 1008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)