Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k10
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 31 0.95
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24) 29 2.9
SB_57140| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81) 28 6.7
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 28 6.7
SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_44313| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_25707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +1
Query: 487 IIRCTDTCALRAARCWLSTTRWTCLAKRRRASTNYLKCSASTPEGICSNTTTSC 648
+I C C LR C LS + CL + + ++ C A P + + C
Sbjct: 28 VIACDSGCCLRMHECKLSEHKLVCLKAKTPCTNSFYGCPAVLPRESIKSHLSIC 81
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 360 CMQINVQTYMPNATIDMRKQPNCIYFRICQYCHLEADVPSPDDHSVYRYLC 512
CM V Y PN+T+ + P+C +C + P P+D S+ YLC
Sbjct: 2475 CMPCPVGQYCPNSTVSVGGPPDCHAGYVCTG---GSSTPEPNDPSM-GYLC 2521
>SB_13989| Best HMM Match : Myb_DNA-binding (HMM E-Value=9.6e-24)
Length = 478
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 261 DHLT-RLRDLIDGMIKNEDVQRFNRINRNDLISACMQIN 374
DHL ++RD I+ + +D +R + +DL A MQIN
Sbjct: 228 DHLEGKMRDEIEQQERKKDKERMKKKKESDLPGAVMQIN 266
>SB_57140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 468 DVPSPDDHSVYRYLCVACGTLLVIDHPLDVFG-ETEEGVNELFEVQRI 608
++ PD ++ YR+LC + T+ + D +FG + + V EL EV R+
Sbjct: 48 ELMKPDVNNEYRHLCSSSSTVTITD---QLFGDDLAKKVKELTEVNRV 92
>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +1
Query: 424 IVYIFEFANIATWRPTCLRPTIIRCTDTCALRAARCWLSTTRWTCLAKRRRASTNYLKCS 603
+V + FA IAT PT TI CT C + C K + +CS
Sbjct: 347 MVQLAAFAKIATQEPTANYVTIDPCTSNPCQNGGTCMNDKGKAVCRCKGKWTGVTCRECS 406
Query: 604 ASTPEG 621
P+G
Sbjct: 407 C--PKG 410
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Frame = -1
Query: 148 IMYSTSKINNARVVA------SQHD----YDRDQIKRELNSLRRNVHDMCTRSGTSFD 5
++Y+ K +NA VA SQ+ + R+++ +L+ + +++HD C + GT D
Sbjct: 690 VLYAPGKASNAGGVAVSGLEMSQNSLRGAWTREEVDEKLSGIMKSIHDTCVQYGTCKD 747
>SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)
Length = 196
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -1
Query: 109 VASQHDYDRDQIKRELNSLRRNVHD 35
++S+H+ ++D+I+ ELN RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +3
Query: 126 IFDVLYIIYYWIKLH*MKLTYKMVSLLK-YALRLTR-EYKENIIPHF-DHLTRLRDLIDG 296
+ VLY +W++LH ++ YK+ + L TR +KE + +F D T + D + G
Sbjct: 69 VISVLYRGNFWLELHKIRHAYKVKKNKEGIVLEETRSHWKERPLFYFHDQATAVDDDVAG 128
Query: 297 MIKN----EDVQRFNRINRNDLISACMQIN 374
+ + +D + + +D I C +N
Sbjct: 129 AVTDDTIVDDDDDESADDGDDFIDVCFDVN 158
>SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -1
Query: 109 VASQHDYDRDQIKRELNSLRRNVHD 35
++S+H+ ++D+I+ ELN RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154
>SB_44313| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 468 DVPSPDDHSVYRYLCVACGTLLVIDHPLDVFG-ETEEGVNELFEVQRI 608
++ PD ++ YR+LC + T+ + D +FG + + V EL EV R+
Sbjct: 9 ELMKPDLNNEYRHLCSSSSTVTITD---QLFGDDLAKEVIELTEVNRV 53
>SB_25707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 529 CWLSTTRWTCLAKRRRASTNYL--KCSASTPEGICSNTTTSCS 651
C + T TC R++TNY C+ +T +NT ++C+
Sbjct: 2 CNTTNTNSTCTTNTYRSNTNYTYSTCTTNTNSTCTTNTYSTCT 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,282,702
Number of Sequences: 59808
Number of extensions: 432865
Number of successful extensions: 1310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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