Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k10
(727 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y07829-1|CAB52384.1| 481|Homo sapiens RING finger protein protein. 31 3.2
AF220122-1|AAG53495.1| 482|Homo sapiens tripartite motif protei... 31 3.2
U97145-1|AAC51647.1| 464|Homo sapiens RET ligand 2 protein. 30 7.3
U93703-1|AAB61922.1| 464|Homo sapiens glial cell line-derived n... 30 7.3
BX005441-5|CAM26238.1| 481|Homo sapiens tripartite motif-contai... 30 7.3
BC114943-1|AAI14944.1| 342|Homo sapiens MAGIX protein protein. 30 7.3
BC041688-1|AAH41688.1| 464|Homo sapiens GDNF family receptor al... 30 7.3
BA000025-88|BAB63332.1| 481|Homo sapiens RNF9 protein. 30 7.3
AY941828-1|AAX46325.1| 359|Homo sapiens glial cell line-derived... 30 7.3
AY326396-1|AAP88378.1| 331|Homo sapiens glial cell line-derived... 30 7.3
AL844220-2|CAI18610.1| 481|Homo sapiens tripartite motif-contai... 30 7.3
AL671859-11|CAI17587.1| 481|Homo sapiens tripartite motif-conta... 30 7.3
AL669914-11|CAI18188.1| 481|Homo sapiens tripartite motif-conta... 30 7.3
AL031283-3|CAI21424.1| 316|Homo sapiens forkhead-associated (FH... 30 7.3
AL031283-1|CAI21423.1| 445|Homo sapiens forkhead-associated (FH... 30 7.3
AK025340-1|BAB15115.1| 275|Homo sapiens protein ( Homo sapiens ... 30 7.3
AF002700-1|AAC52036.1| 464|Homo sapiens GDNF family receptor al... 30 7.3
AB202085-1|BAE78605.1| 481|Homo sapiens tripartite motif-contai... 30 7.3
AB103595-1|BAF31256.1| 481|Homo sapiens Zn-finger protein protein. 30 7.3
AB088089-1|BAC54921.1| 481|Homo sapiens tripartite motif-contai... 30 7.3
>Y07829-1|CAB52384.1| 481|Homo sapiens RING finger protein protein.
Length = 481
Score = 31.5 bits (68), Expect = 3.2
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSSKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGASCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
>AF220122-1|AAG53495.1| 482|Homo sapiens tripartite motif protein
TRIM10 alpha protein.
Length = 482
Score = 31.5 bits (68), Expect = 3.2
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 334 QFSSKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGASCTVGVVSEDVQRKG 393
Query: 389 HVRL 378
+RL
Sbjct: 394 ELRL 397
>U97145-1|AAC51647.1| 464|Homo sapiens RET ligand 2 protein.
Length = 464
Score = 30.3 bits (65), Expect = 7.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 357 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 461
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263
>U93703-1|AAB61922.1| 464|Homo sapiens glial cell line-derived
neurotrophic factor receptor beta protein.
Length = 464
Score = 30.3 bits (65), Expect = 7.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 357 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 461
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263
>BX005441-5|CAM26238.1| 481|Homo sapiens tripartite
motif-containing 10 protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
>BC114943-1|AAI14944.1| 342|Homo sapiens MAGIX protein protein.
Length = 342
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 519 CGTLLVIDHPLDVFGETEEGVNELFEVQRINAGG 620
CG L V D L + GE+ +G+ V+RI AGG
Sbjct: 106 CGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG 139
>BC041688-1|AAH41688.1| 464|Homo sapiens GDNF family receptor alpha
2 protein.
Length = 464
Score = 30.3 bits (65), Expect = 7.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 357 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 461
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263
>BA000025-88|BAB63332.1| 481|Homo sapiens RNF9 protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
>AY941828-1|AAX46325.1| 359|Homo sapiens glial cell line-derived
neurotrophic factor family receptor alpha2b protein.
Length = 359
Score = 30.3 bits (65), Expect = 7.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 357 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 461
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 123 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 158
>AY326396-1|AAP88378.1| 331|Homo sapiens glial cell line-derived
neurotrophic factor family receptor alpha2c protein.
Length = 331
Score = 30.3 bits (65), Expect = 7.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 357 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 461
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 95 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 130
>AL844220-2|CAI18610.1| 481|Homo sapiens tripartite
motif-containing 10 protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
>AL671859-11|CAI17587.1| 481|Homo sapiens tripartite
motif-containing 10 protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
>AL669914-11|CAI18188.1| 481|Homo sapiens tripartite
motif-containing 10 protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
>AL031283-3|CAI21424.1| 316|Homo sapiens forkhead-associated (FHA)
phosphopeptide binding domain 1 protein.
Length = 316
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -1
Query: 364 MQAEIKSLRLMRLKRCTSSFLIMPSIRSRNRVKWSKCGIMFSLYSRVK 221
M+ E+K LR K CT +I ++R +++++ + ++ + Y R K
Sbjct: 131 MEKEMKKLRAELRKSCTEQSVISRTLREKSKLEHFRSQVIKATYGRAK 178
>AL031283-1|CAI21423.1| 445|Homo sapiens forkhead-associated (FHA)
phosphopeptide binding domain 1 protein.
Length = 445
Score = 30.3 bits (65), Expect = 7.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -1
Query: 364 MQAEIKSLRLMRLKRCTSSFLIMPSIRSRNRVKWSKCGIMFSLYSRVK 221
M+ E+K LR K CT +I ++R +++++ + ++ + Y R K
Sbjct: 152 MEKEMKKLRAELRKSCTEQSVISRTLREKSKLEHFRSQVIKATYGRAK 199
>AK025340-1|BAB15115.1| 275|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21687 fis, clone COL09385. ).
Length = 275
Score = 30.3 bits (65), Expect = 7.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 519 CGTLLVIDHPLDVFGETEEGVNELFEVQRINAGG 620
CG L V D L + GE+ +G+ V+RI AGG
Sbjct: 106 CGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG 139
>AF002700-1|AAC52036.1| 464|Homo sapiens GDNF family receptor alpha
2 protein.
Length = 464
Score = 30.3 bits (65), Expect = 7.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 357 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 461
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263
>AB202085-1|BAE78605.1| 481|Homo sapiens tripartite
motif-containing 10 protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
>AB103595-1|BAF31256.1| 481|Homo sapiens Zn-finger protein protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
>AB088089-1|BAC54921.1| 481|Homo sapiens tripartite
motif-containing 10 protein.
Length = 481
Score = 30.3 bits (65), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 569 RFAKHVQRVVDNQQRAARNAQVSVHRMIVGRRHVGLQVAILANSKIYTIGLFAHIYRGVG 390
+F+ Q DN QR R V H I G RH + LA+ T+G+ + + G
Sbjct: 333 QFSYKWQNSPDNPQRFDRATCVLAHTGITGGRHTWVVSIDLAHGGSCTVGVVSEDVQRKG 392
Query: 389 HVRL 378
+RL
Sbjct: 393 ELRL 396
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,786,112
Number of Sequences: 237096
Number of extensions: 1886743
Number of successful extensions: 3501
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3501
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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