Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k10
         (727 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3747|AAN12210.1|  170|Drosophila melanogaster CG11100-P...    30   2.8  
AY071278-1|AAL48900.1|  347|Drosophila melanogaster RE30702p pro...    29   8.5  
AE014134-1061|AAF52351.2|  471|Drosophila melanogaster CG13990-P...    29   8.5  

>AE014296-3747|AAN12210.1|  170|Drosophila melanogaster CG11100-PA,
           isoform A protein.
          Length = 170

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 415 LRISIVALGMYV*TLICMQAEIKSLRLMRLKRCT-SSFLIMPSIRSRNRV 269
           +R ++ A+ +++ T +CM   +K +RL+ + RC   +FL   ++ +R  +
Sbjct: 102 VRFTLCAMYIHIRTYVCMYIWVKKVRLIEVLRCLYRAFLKYSTVETRGLI 151


>AY071278-1|AAL48900.1|  347|Drosophila melanogaster RE30702p
           protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = +1

Query: 469 TCLRPTIIRCTDTCALRAARCWLSTTRWTCLAKRRR--ASTNYLKCSASTPEGICSNTTT 642
           TC  P  +  T TCA         TT  TC        A T    C+ +T       TTT
Sbjct: 129 TCT-PASVTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTT 187

Query: 643 SCS 651
           +C+
Sbjct: 188 TCA 190


>AE014134-1061|AAF52351.2|  471|Drosophila melanogaster CG13990-PA
           protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = +1

Query: 469 TCLRPTIIRCTDTCALRAARCWLSTTRWTCLAKRRR--ASTNYLKCSASTPEGICSNTTT 642
           TC  P  +  T TCA         TT  TC        A T    C+ +T       TTT
Sbjct: 129 TCT-PASVTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTTTCAPTTTT 187

Query: 643 SCS 651
           +C+
Sbjct: 188 TCA 190


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,349,164
Number of Sequences: 53049
Number of extensions: 627240
Number of successful extensions: 1601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)