Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k10
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22940.1 68417.m03312 protein kinase family protein contains ...    29   2.4  
At1g80980.1 68414.m09503 expressed protein                             28   7.2  
At1g80700.1 68414.m09469 expressed protein                             28   7.2  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    28   7.2  
At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase, p...    28   7.2  
At1g71850.1 68414.m08303 expressed protein ; expression supporte...    27   9.6  
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    27   9.6  

>At4g22940.1 68417.m03312 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 458

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 186 KLVSFNATLSNNILCIARQKLTMRALSHLNTTMIE 82
           K + F+   S +I CIAR+ + +R L H N   +E
Sbjct: 132 KRIRFDINNSESIKCIAREIIILRKLDHPNVIKLE 166


>At1g80980.1 68414.m09503 expressed protein
          Length = 214

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 696 LQTTRRDSTKAQNKLRTTSSGVATNS 619
           L  TRR  TK +NKL  T S VA +S
Sbjct: 17  LYRTRRFCTKGENKLEKTESSVAHHS 42


>At1g80700.1 68414.m09469 expressed protein
          Length = 214

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 696 LQTTRRDSTKAQNKLRTTSSGVATNS 619
           L  TRR  TK +NKL  T S VA +S
Sbjct: 17  LYRTRRFCTKGENKLEKTESSVAHHS 42


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes from
            this gene
          Length = 1035

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 450  YCHLEADVPSPDDHSVYRYLCVACGTLLVIDHPLDVFGETEEGVNEL 590
            +C  + D+   D  S+ +  C  CG  L+ +  +D   ET EGV +L
Sbjct: 916  FCRTDHDLIEEDFESLKKVYCT-CGEGLIPEEVVDREAETVEGVIQL 961


>At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase,
           putative Similar to Arabidopsis 2A6 (gb|X83096) and to
           tomato ethylene synthesis regulatory protein E8
           (SP|P10967); EST gb|T76913 comes from this gene
          Length = 360

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 384 YMPNATIDMRKQPNCIYFRICQYCHLEADVPSPDD 488
           ++ N+  D+    +C+ +R    C++  D P+P+D
Sbjct: 129 FVYNSNFDLYSSSSCVNWRDSFACYMAPDPPNPED 163


>At1g71850.1 68414.m08303 expressed protein ; expression supported
           by MPSS
          Length = 470

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 177 KLTYKMVSLLKYALRLTREYKENIIPHFDHLTRL 278
           K+  +++ LLK+ L L ++Y E ++P F    R+
Sbjct: 149 KIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRV 182


>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 309 EDVQRFNRINRNDLISACMQINVQTYMPNATIDMRKQPNCIYFRICQYCHLEADVPSPDD 488
           ED  + N  + ND  S C  +  Q Y  +      KQ     F + +  HLE   P+P D
Sbjct: 572 EDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQLKGFEMLKAIHLE---PNPFD 628


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,551
Number of Sequences: 28952
Number of extensions: 281225
Number of successful extensions: 737
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)