Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k09
         (391 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    27   0.24 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   0.42 

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 249 SIWIEFLRF*C*NRSIERANRPKAGTILPA 160
           SIW E L+F C  + + R +RP    ++ A
Sbjct: 776 SIWAESLKFECRKQWLRRCHRPLVNRVISA 805


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 120 TNTKVDSVQTQLNGLEESFQPLDGLPAQLT 209
           TN+KV  +QT++NGL +    L    ++LT
Sbjct: 891 TNSKVKVLQTKINGLGKQIDKLSANISKLT 920



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 111 IAETNTKVDSVQTQLNGLEESFQPLDGLPAQLT 209
           I +   +   +QTQ+N L+E    L+    +LT
Sbjct: 772 IEQMQIRAQEIQTQINYLQEQQGELEATIQRLT 804


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 309,800
Number of Sequences: 2352
Number of extensions: 4774
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30356973
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)