Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k09
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51110.1 68416.m05597 crooked neck protein, putative / cell c...    28   1.9  
At4g21640.1 68417.m03136 subtilase family protein similar to sub...    27   3.4  
At2g28010.1 68415.m03394 aspartyl protease family protein contai...    27   4.5  
At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containi...    27   5.9  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    26   7.8  

>At3g51110.1 68416.m05597 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 413

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 294 SVGFRSLEDPEQCHRSIWIEFLRF*C*NRSIERANR--PKAGTILPARLTEF 145
           SV  R+LED    + ++W+++  F   N+S+  A     +A  ILP R+ +F
Sbjct: 92  SVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILP-RVDQF 142


>At4g21640.1 68417.m03136 subtilase family protein similar to
           subtilase SP1 [Oryza sativa] GI:9957714
          Length = 733

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 327 ASESNSKAWIFSVGFRSLEDPE 262
           AS+SNSK +I  +G R  +DPE
Sbjct: 34  ASDSNSKVYIVYLGQREHDDPE 55


>At2g28010.1 68415.m03394 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 396

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 48  VNYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLE 167
           V+  +F   +KP      LDA++  NT+++++ T  + LE
Sbjct: 227 VSTTMFMTTAKPGFYYLNLDAVSVGNTRIETMGTTFHALE 266


>At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 574

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 33  LKSYTVNYILFTIMSKPNVLTRILDAIAETNTKVDSV--QTQLNGLEESFQPLDGLPAQL 206
           L SYT      T+  +   ++ I+  + ++ TK+DS+     +N   ES    D + A L
Sbjct: 80  LISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALL 139


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 180 PLDGLPAQLTDFNTKISEIQSILTG 254
           P D  P  LTDFN   SEI+ +  G
Sbjct: 623 PKDFNPKNLTDFNLPYSEIEELWEG 647


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,455,106
Number of Sequences: 28952
Number of extensions: 108319
Number of successful extensions: 249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)