Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k08
         (733 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.8  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.8  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.8  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 390 KNLGVSLHHNPWSLTCWLVAVSIILAK 470
           ++LG++LHH  W L     A   ++AK
Sbjct: 199 EDLGINLHHWHWHLVYPFEAAREVVAK 225


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 369 KNHLRVLKNLGVSLHHNPWS 428
           + +L VLKN+     H PW+
Sbjct: 443 RKYLPVLKNMPSQYIHEPWT 462


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 517 KRRRRPTPAQTKLQICQRNRRLFR 588
           K+ R+P    + LQ+ Q NRR  R
Sbjct: 119 KKMRKPRTIYSSLQLQQLNRRFQR 142


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 159 RPSVESIKKLNCLKFI 112
           RPS E +K+ N +KF+
Sbjct: 148 RPSFEGLKRQNPVKFL 163


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 596 HFSKLDVAEKEILAADLSPPQLSVKPS 676
           +F KLD  E ++   D  PP  S + S
Sbjct: 137 NFMKLDEIEVKVTGNDAPPPITSFETS 163


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 429 LTCWLVAVSIILAKPAIYV 485
           L CWL++  I +  P  Y+
Sbjct: 222 LRCWLISKCIYVFNPRYYL 240


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 429 LTCWLVAVSIILAKPAIYV 485
           L CWL++  I +  P  Y+
Sbjct: 222 LRCWLISKCIYVFNPRYYL 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,261
Number of Sequences: 336
Number of extensions: 3776
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)