Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k08
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415...    29   5.0  
04_04_0708 - 27441373-27442611                                         29   5.0  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    29   5.0  
06_02_0166 + 12522172-12522890,12523567-12524596                       28   6.6  

>07_03_1405 +
           26340645-26340921,26341003-26341226,26341315-26341562,
           26341622-26342051,26342630-26343049
          Length = 532

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 647 SPPQLSVKPSAPPAEPLTQHVSECKVWF 730
           +PP+L  K   PP   + + + ECK +F
Sbjct: 307 APPELGTKRRQPPVLSMDEIIDECKTFF 334


>04_04_0708 - 27441373-27442611
          Length = 412

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 506 FKYKSVDDAQRRHKQNCKFVNAIEDYS-VNEHF--SKLDVAEKEILAADLSPPQLSVKPS 676
           F   ++++ +   ++  +F+     Y  V EH   S   V + ++  +  SPP L   P 
Sbjct: 186 FSDGAIEEEEEEEEEETEFLLRKARYGGVREHAIPSPSSVLDADLTLSPCSPPLLPPPPP 245

Query: 677 APPAEPLTQH 706
            PP  P   H
Sbjct: 246 PPPPPPFLDH 255


>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
 Frame = +2

Query: 461 FGKAGHLRCSGCH-IVFKYKSVDDAQRRHKQN-CKFVNAIE-DY--SVNEHFSKLDVAEK 625
           FG AG +RC  C   +  Y +  DA R+ + N C  +N +  +Y   ++    + D  ++
Sbjct: 348 FGSAGVIRCRRCRTYINPYATFADAGRKWRCNLCTLLNDVPGEYFCGIDGSGRRYDADQR 407

Query: 626 EILAAD----LSPPQLSVKPSAPPA 688
             L+      ++P +  V+P  PP+
Sbjct: 408 PELSKGTVEFVAPTEYMVRPPMPPS 432


>06_02_0166 + 12522172-12522890,12523567-12524596
          Length = 582

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 614 VAEKEILAADLSPPQLSVKPSAPPA 688
           VAE+E+ AA LSPP ++  P   P+
Sbjct: 268 VAEEEVAAAALSPPPVTTPPPPRPS 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,499,778
Number of Sequences: 37544
Number of extensions: 358573
Number of successful extensions: 1205
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)