Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k08
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9) 33 0.24
SB_46038| Best HMM Match : TRI5 (HMM E-Value=3.5) 29 2.9
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43) 29 3.9
SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30) 29 5.1
SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4) 29 5.1
SB_27618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44) 28 6.8
SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17) 28 6.8
SB_8481| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_31737| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)
Length = 493
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 530 AQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEILAADLSPPQLSVKPSAPPAEPLTQHV 709
A R+ N +V+ D S+ E+E++ +PP L V PPA PL + +
Sbjct: 399 AHHRNINNNDYVSDDSDTSMISDLDDESDEEEEVIRDAPTPPPLPVIEVIPPAPPLERTL 458
Query: 710 SEC 718
EC
Sbjct: 459 DEC 461
>SB_46038| Best HMM Match : TRI5 (HMM E-Value=3.5)
Length = 541
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 473 GHLRCSGCHIVFKYKSVDDAQRRHKQNCKFVNAIEDYSVNE 595
GH+ C+ C +V+ DD + + KFVN ++ ++V E
Sbjct: 381 GHITCATCGMVYMSAQPDDEADHIRHHKKFVNGLK-FNVEE 420
>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 307 VSFNLLGVNLVQNRATAYTFNQVIVRKQPRFGQFKFVLIV 188
V+ + GV + +A F+ ++RK+P FG+ + LI+
Sbjct: 762 VNMGVKGVAICDRKAIDAMFDVKVIRKEPAFGRLNYNLIL 801
>SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)
Length = 565
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 11/86 (12%)
Frame = +2
Query: 503 VFKYKSVDDAQRR--HKQNCKFVNAIEDYSVNEH---FSKLDVAEKEILA------ADLS 649
V +Y S ++ QR HK ++A E + +H + LD EK+ LA ADL
Sbjct: 29 VERYTSEEEKQRLADHKLELADLDAQEKQRLADHKLELADLDAQEKQRLADHKLELADLD 88
Query: 650 PPQLSVKPSAPPAEPLTQHVSECKVW 727
+ ++ A+ L H S+ ++W
Sbjct: 89 AQEKAIDQRLREAKHLLHHTSQARLW 114
>SB_49289| Best HMM Match : Homeobox (HMM E-Value=6e-30)
Length = 285
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 181 HVCHCSESTVCGKYQKIKLPQ 119
HVCHC E T+ +IK P+
Sbjct: 98 HVCHCIEPTIKSSVSQIKAPR 118
>SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)
Length = 422
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 473 GHLRCSGCHIVFKYKSVDDAQRRHKQNCKFVNAIE 577
GH+ C+ C +V+ DD + + KFVN ++
Sbjct: 356 GHITCATCGMVYMSAQPDDEADHIRHHKKFVNGLK 390
>SB_27618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 620 EKEILAADLSPPQLSVKPSAPPAEPLTQHVSEC 718
E+EI +PP L V PPA PL + + EC
Sbjct: 12 EEEINRDAPTPPPLPVIEVIPPAPPLERSLDEC 44
>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
Length = 1021
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 506 KLYGIRNNVNGRLCQNNRNRDEPTC 432
KLY + N + LC N RN + C
Sbjct: 675 KLYDVHRNTSQMLCNNQRNMQQGVC 699
>SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)
Length = 735
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 278 CPKSCDSLYI*SGYCEK--TAPFWPIQICTHCLATCLPL 168
C KSC+ LY+ G CEK AP W + C C+ L
Sbjct: 297 CLKSCEELYL--GLCEKENIAPSW--RFLRECETECVSL 331
>SB_8481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 620 EKEILAADLSPPQLSVKPSAPPAEPLTQHVSEC 718
E+EI +PP L V PPA PL + + EC
Sbjct: 12 EEEINRDAPTPPPLPVIEVIPPAPPLERSLDEC 44
>SB_31737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Frame = +3
Query: 399 GVSLHHNPWSLTC---WLV 446
GV LH NPW TC WLV
Sbjct: 63 GVYLHGNPWDCTCNLQWLV 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,965,778
Number of Sequences: 59808
Number of extensions: 437744
Number of successful extensions: 1014
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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