Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k08
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    28   5.9  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    28   5.9  
Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
           germline protein5 protein.
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 509 KYKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEIL---AADLSPPQLSVKPSA 679
           + ++V D  +R +     VN IE+  ++    ++D    E L     DL+P  + V+P  
Sbjct: 273 RVQTVADVLKRGENVKVKVNKIENGKISLSMKEVDQNSGEDLNPRETDLNPDAIGVRPRT 332

Query: 680 PPA 688
           PPA
Sbjct: 333 PPA 335


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
           protein MOG-5 protein.
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 509 KYKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEIL---AADLSPPQLSVKPSA 679
           + ++V D  +R +     VN IE+  ++    ++D    E L     DL+P  + V+P  
Sbjct: 273 RVQTVADVLKRGENVKVKVNKIENGKISLSMKEVDQNSGEDLNPRETDLNPDAIGVRPRT 332

Query: 680 PPA 688
           PPA
Sbjct: 333 PPA 335


>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 260 SLYI*SGYCEKTAPFWPIQIC 198
           S Y+  GY EKT+P+ P  +C
Sbjct: 73  SYYVVDGYFEKTSPYAPFVLC 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,493
Number of Sequences: 27780
Number of extensions: 348246
Number of successful extensions: 913
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)