Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k08
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 224 LFSHNNLIKCIGCRTILDKINAKQIKRHTYSDYCISSTNALM 349
           LF +NN I  +   T  DK+N  ++  +      +  T+ L+
Sbjct: 622 LFINNNYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLLL 663


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 369 KNHLRVLKNLGVSLHHNPWS 428
           + +L VLKN      H PW+
Sbjct: 447 RRYLPVLKNFPTRYIHEPWN 466


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 167 TMANMSLDNEYKFELAKTGLFSHNNLIKCIGCRTILDKINAKQIKR 304
           + ++ S+D +    LA TG+  H N  +  G  TI D++ ++ + +
Sbjct: 278 SFSHRSIDVKDGIVLA-TGITVHRNSAQQAGVGTIFDRVLSELVSK 322


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 167 TMANMSLDNEYKFELAKTGLFSHNNLIKCIGCRTILDKINAKQIKR 304
           + ++ S+D +    LA TG+  H N  +  G  TI D++ ++ + +
Sbjct: 278 SFSHRSIDVKDGIVLA-TGITVHRNSAQQAGVGTIFDRVLSELVSK 322


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 496 ASGTT*MAGFAKIIETATSQHVNDHGL 416
           ++GTT  +   +++    SQH   HGL
Sbjct: 178 STGTTTTSTGTRLLHGILSQHPQQHGL 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,864
Number of Sequences: 438
Number of extensions: 4013
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)