Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k08
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    29   4.2  
At2g38910.1 68415.m04783 calcium-dependent protein kinase, putat...    28   5.6  
At5g24580.2 68418.m02903 copper-binding family protein similar t...    28   7.3  
At5g24580.1 68418.m02902 copper-binding family protein similar t...    28   7.3  
At1g56410.1 68414.m06487 heat shock cognate 70 kDa protein, puta...    27   9.7  
At1g17270.1 68414.m02103 expressed protein                             27   9.7  

>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 581 YSVNEHFSKLDVAEKEILAADLSPPQLSVKPSAPPAEP 694
           Y   ++ SK ++ E+E    ++      VKPS+PP +P
Sbjct: 211 YQQFQNLSKTEIEEEESEPKEIQIDTFVVKPSSPPQQP 248


>At2g38910.1 68415.m04783 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 583

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 515 KSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEILAADLSPPQLSVKPSAPPAEP 694
           KS  D   R K+N K VN   D S     S +D A   +      PP + +    PP +P
Sbjct: 34  KSSKDESSR-KKNDKSVNG--DDSNGHVSSTVDPAPSTLPTPSTPPPPVKMANEEPPPKP 90

Query: 695 LTQH 706
           +T++
Sbjct: 91  ITEN 94


>At5g24580.2 68418.m02903 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 318

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 593 EHFSKLDVAEKEILAADLSPPQLSVKPSAPPAEP 694
           E   K DVAE++ +AA+   P+   +P  PP  P
Sbjct: 22  EEEKKKDVAEEKKVAAEEEKPKEEEEPQPPPPPP 55


>At5g24580.1 68418.m02902 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 319

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 593 EHFSKLDVAEKEILAADLSPPQLSVKPSAPPAEP 694
           E   K DVAE++ +AA+   P+   +P  PP  P
Sbjct: 23  EEEKKKDVAEEKKVAAEEEKPKEEEEPQPPPPPP 56


>At1g56410.1 68414.m06487 heat shock cognate 70 kDa protein,
           putative / HSC70, putative / HSP70, putative strong
           similarity to heat shock cognate 70 kd protein 1
           SP:P22953 [Arabidopsis thaliana (Mouse-ear cress)]
          Length = 617

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 509 KYKSVDDAQRRHKQNCKFVNAIEDYSVNEHFSKLDVAEKEILAAD 643
           KYKS D+    HK+  +  N +E+Y+ N   +  D+ EK + AAD
Sbjct: 530 KYKSEDE---EHKKKVEAKNGLENYAYNVGNTLRDMGEK-LPAAD 570


>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 294 KLNDTHI-RIIAYHQPTR*CSMNR*EKNHLRVLKNLGVSLH---HNPWS 428
           K N+ HI R I Y    + C +   +++H++ LK LGVS+      PWS
Sbjct: 287 KKNNAHIDRFICYVSSPQPCYV---DEDHIKKLKGLGVSIGGKLEAPWS 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,629
Number of Sequences: 28952
Number of extensions: 303143
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)