Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k07
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    26   0.36 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   3.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 339 HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 446
           H+C   + F   N +  F  + C SN C N  VC I
Sbjct: 360 HKCTCPEGFYGKNCE--FSGYDCDSNPCQNGGVCRI 393


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 602 CR*VYKNETCQMQQSSNGHRNCK 670
           C+  +K +TC ++ S   H  CK
Sbjct: 132 CKNGWKGKTCSLKDSHCDHTTCK 154


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 193 EVITKVRLS*NPFAI*IRGFR 255
           E ITK++++ NPFA   +GFR
Sbjct: 184 EKITKLKINYNPFA---KGFR 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,000
Number of Sequences: 336
Number of extensions: 3072
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)