Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k07
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   3.6  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   3.6  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    27   3.6  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.3  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   6.3  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   6.3  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 72  YRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSNTVPAYLLIRG 197
           Y     P R TG+V  +D+N K  +V  +++    A + + G
Sbjct: 401 YNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHG 442


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 198 HLLLKDMQAPCLRTRV*LKKLFRSYQQHTRRPS 100
           H+L K     C+ TR  LK+ +  + +HT + S
Sbjct: 3   HILNKGSSKSCIYTRPCLKRFYHQHYEHTGKLS 35


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 117 VVDKNEKVFLVKHVFSNTVPAYLLI 191
           V D +++VF+V H+F +++PA  L+
Sbjct: 101 VTDASKEVFVVVHMFQDSLPACKLL 125


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 683 LFIAVYNFGDRSNFVAFDTFHF-YTLIYNIC 594
           L  A+  F DRS  VAF +F +   L+Y IC
Sbjct: 125 LIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 630 VKCNKVRTVTEIVNSDEKIQKNL 698
           + C ++RTV  I+ S   IQ NL
Sbjct: 455 ISCKQIRTVNRIILSGTPIQNNL 477


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 375 NSKHVFDHFGCSSNYCFNNYV 437
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 624 KRVKCNKVRTVTEIVNSDEKIQKNLRIG 707
           K+V    +  V++I  SDEKI+KN  +G
Sbjct: 346 KKVSSKSLSDVSDINISDEKIEKNGDVG 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,184
Number of Sequences: 5004
Number of extensions: 49801
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)