Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k07
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338...    29   2.8  
03_01_0298 + 2318836-2319051,2321238-2323106                           29   3.7  
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388...    28   6.5  
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499     28   8.6  
04_04_0463 - 25397837-25399693,25402136-25402405                       28   8.6  

>04_03_0128 -
           11530618-11530838,11532683-11532809,11533746-11533892,
           11533981-11534082,11534207-11534332,11535507-11535584,
           11535780-11535827,11536005-11536193
          Length = 345

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 241 FKSRRDFNSDELS*SPL-IKRYAGTVFENTCLTKKTFSFLSTTYTSPVKR 95
           +KS    +SD+LS S   +K+  G + + TC TKK+ SF   T   PV R
Sbjct: 271 YKSEDGDSSDDLSDSSSEVKKNKGKLEKTTCKTKKSVSF--NTAKRPVGR 318


>03_01_0298 + 2318836-2319051,2321238-2323106
          Length = 694

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 372 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 470
           A   H F HF C SSN    NYVC + +  WK+L
Sbjct: 92  AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124


>04_04_0224 -
           23738105-23738273,23738364-23738472,23738702-23738804,
           23738895-23738926,23739342-23739592,23739639-23739754,
           23740271-23740526,23740760-23740847,23740985-23741062,
           23741238-23741313,23741532-23741590,23742639-23742711
          Length = 469

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 240 LNREGISTQTNFRNHLLLKDMQ 175
           +NREGIS   N  N LLLK +Q
Sbjct: 77  INREGISYYNNLINELLLKGVQ 98


>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
          Length = 524

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 141 KLFRSYQQHTRRPSNGPAANSAGTRAGW 58
           +L    +Q+   P  GPA NS+G  AGW
Sbjct: 334 RLSEEDKQNMPLPVQGPACNSSGHLAGW 361


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 372 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 470
           A   H+F HF C SSN    NY C I +  WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,015
Number of Sequences: 37544
Number of extensions: 284791
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)