Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k07
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)                    31   0.72 
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 31   0.95 
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)         31   0.95 
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)                       30   2.2  
SB_40941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)
          Length = 285

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 12  AINRLFGATETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVFLVK 152
           A++RL  A+  +  H N  + R S  P  +TG+ Y+    ++++ +K
Sbjct: 9   ALSRLHRASFHLTLHDNQFLGRASEQPCDVTGEYYINQPRDRIYPIK 55


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = +3

Query: 63  LLVYRQSSP-------PVRLTGDVYVVDKNEKVFLVKHVFSNTVPAY 182
           +LVY +SSP         RLTG  YV  +N +V L KHV     P Y
Sbjct: 13  VLVYNRSSPLSAEDEKEKRLTGVQYVTSENREVTLEKHVHLKQRPLY 59


>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
          Length = 375

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
 Frame = +3

Query: 63  LLVYRQSSP-------PVRLTGDVYVVDKNEKVFLVKHVFSNTVPAY 182
           +LVY +SSP         RLTG  YV  +N +V L KHV     P Y
Sbjct: 13  VLVYNRSSPLSAEDEKEKRLTGVQYVTSENREVTLEKHVHLKQRPLY 59


>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 36  TETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSNTVP 176
           ++ +D      ++RQ+ P V+L G++  +  N+K F    +F +T+P
Sbjct: 5   SDKLDIQQLREIWRQNGPDVKLAGEISNLLLNKKCFFELEMFLSTLP 51


>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
          Length = 518

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 180 YLLIRGDYESSSELKSLRDLNPWVQNTLLKLL 275
           Y L+RG  +SS E+KS+R  +PW    LL L+
Sbjct: 68  YYLVRGFLKSSEEMKSIRH-SPWSVVALLTLV 98


>SB_40941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = +3

Query: 522 KRDRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKNLR 701
           K  R YE+F+RY     +     K  VV      KR   N  R   +I N     QK L 
Sbjct: 15  KIKREYETFRRYFGMRDVGFAVEKCTVVHLPFPQKRNPLNVPRLRVQITNRMRDDQKCLA 74

Query: 702 IGR 710
            GR
Sbjct: 75  RGR 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,566,480
Number of Sequences: 59808
Number of extensions: 361626
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)