Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k07
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    30   1.5  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.5  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.5  
U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 324 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 446
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 324 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 446
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 324 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 446
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical
           protein C27D9.1 protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 585 ASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKNLRI 704
           A    V+D+ +K  RVK   +R +TE  + D ++  N RI
Sbjct: 248 AHPREVIDRIVKAWRVKSINIRFMTEYSSIDHEMWSNKRI 287


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 345 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 431
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,664,848
Number of Sequences: 27780
Number of extensions: 279579
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)