Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k07
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein end...    29   3.1  
At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger) fa...    28   7.2  

>At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291
          Length = 497

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 93  VRLTGDVYVVDKNEKVFLVKHVFSNTVPAYLLIR-GDYESSSELKSLRDLNPWVQNTLLK 269
           + LTG  Y    N K F     F+ T+ A+ +I  G++  SSEL++      W  N LLK
Sbjct: 71  IDLTGGYYDAGDNVK-FNFPMAFTTTMLAWSVIEFGEFMPSSELRNSLVALRWSSNYLLK 129


>At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 497

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 716 SNSANS*VFLDLFIAVYNFGDRSNFVAFDTFHFYTL 609
           SN+ NS V L+LF     FG   + ++ D+F  Y L
Sbjct: 305 SNNLNSPVSLELFSGFPEFGLSGSLLSHDSFRSYNL 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,531
Number of Sequences: 28952
Number of extensions: 249069
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)