Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k06
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667...    33   0.22 
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602...    33   0.29 
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    31   1.2  
08_01_0205 - 1642769-1642783,1642923-1643555,1643656-1643737,164...    29   3.6  
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755     29   3.6  
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    28   6.3  
08_01_0168 - 1385439-1385979,1386081-1387438                           28   8.4  

>04_04_1312 +
           32565447-32565585,32566008-32566060,32566139-32566771,
           32566844-32566972,32567052-32567144,32567220-32567336,
           32567412-32567512,32567603-32567870,32568236-32568265,
           32568361-32568572,32568650-32568731,32568804-32569555,
           32569640-32569811,32570412-32570498,32570578-32570895,
           32570982-32571107
          Length = 1103

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 233 RIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 96
           R +   +L   I +++L   +S     +CF    YM TSI FI C+
Sbjct: 422 RSMFSTELKTKIKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 467


>04_04_1311 -
           32559549-32559674,32559761-32560078,32560158-32560244,
           32560845-32561016,32561101-32561852,32561925-32562006,
           32562084-32562295,32562391-32562420,32562786-32563074,
           32563143-32563243,32563319-32563435,32563511-32563603,
           32563683-32563811,32563884-32564516,32564765-32564844,
           32565152-32565164
          Length = 1077

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 200 INVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 96
           I +++L   +S     +CF    YM TSI FI C+
Sbjct: 407 IKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 441


>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 563 GSCHNTVKYMVDIYGASVLILRTP 634
           G CHN VK +  IYG + L+L  P
Sbjct: 546 GDCHNAVKLLSKIYGRNPLLLLAP 569


>08_01_0205 -
           1642769-1642783,1642923-1643555,1643656-1643737,
           1644474-1644514
          Length = 256

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 676 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 518
           +C+  A QL GK+   S  ++  SV + + F ++ TR    +D   M + +GE
Sbjct: 196 ICSGIAAQLFGKKNELSNQESVASVTIPYSFPKLWTRVE--IDDAMMCKINGE 246


>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
          Length = 482

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 166 DEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLDEKI 291
           +EI+ LK+D   + S LQNNT++     +   K++  L+EK+
Sbjct: 170 EEIERLKSDNAALSSELQNNTLKK----LNMEKRMQALEEKL 207


>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
            33817363-33817539,33817638-33817964,33818067-33818192,
            33818518-33818622,33818815-33820125,33820221-33820382,
            33820416-33820517,33820549-33821272,33821358-33821451,
            33821824-33821986
          Length = 1285

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 157  NVVDEIDSLKTDTFMML--SNLQNNTIRTWDAVVKNGKKISNLDEKI 291
            +V   +  +KTD   +L  +++QNNT+     V K+   ++N +E++
Sbjct: 941  HVFSAVLCMKTDLLFVLVHTSMQNNTLEVGKDVAKDTDNVANAEEQV 987


>08_01_0168 - 1385439-1385979,1386081-1387438
          Length = 632

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 176 SISSTTLEKC--FSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQMLNVAQK 30
           SI S T E    FS++  MT ++D+ S SS+     +    TK   N++ K
Sbjct: 180 SIVSVTNESLPDFSLNGSMTATVDYNSSSSILSVKLWINDTTKPPYNLSDK 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,695,614
Number of Sequences: 37544
Number of extensions: 331465
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)