Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k06
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    29   2.5  
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = -2

Query: 353 SSVY*TLSRLLTTPFFVNSTLIFSSRLDIFLPFFTTASHVR----IVLFCKLLNIINVSV 186
           S +Y  ++ ++  P F+  TLIF S L +F+ FF + SH+     ++L   LL++   S+
Sbjct: 13  SKIYEVINEIVY-PIFLTITLIFHSVLLVFIIFF-SPSHLNFLKFLLLTTSLLDVFATSI 70

Query: 185 L 183
           L
Sbjct: 71  L 71


>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +2

Query: 455 IDTDYIYQNLKMPLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLIL-RT 631
           ID   I+Q+  + L  F  ++ T+  K  KM+N  G   +  V  ++ +Y  S   L R 
Sbjct: 183 IDKKIIFQHTILKLTYFCGVMRTVNEKRSKMMNPGGQEIYPDV--ILQLYEKSKSTLHRI 240

Query: 632 PCSFADQLLSTFIANNYLC 688
            C   D+LL   + +   C
Sbjct: 241 CCQPLDKLLEWEVTDEEYC 259


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
 Frame = -2

Query: 347 VY*TLSRLLTTPFFVNSTLIFS-SRLDIFLPFFTTASHVRIVLFCKLLNI--------IN 195
           +Y T S +LT    +N++ +F  S +   L         R  ++C LL+I        +N
Sbjct: 414 LYETASNMLTVDHLLNASAVFGISSIISRLTNIGVIPTQRADVWCTLLDINETKWRDYLN 473

Query: 194 VSVLRESISSTTLE----KCFSIDSYMTT 120
           + VL    S   LE    +C   DSYMTT
Sbjct: 474 LDVLASHSSDRQLEVDIPRCHQYDSYMTT 502


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 248 TASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISC 99
           T   + IV+F  L+ +I        +    + +   ID ++TT +DF  C
Sbjct: 38  TRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87


>Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical
           protein T03F7.7b protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = -1

Query: 282 VEIGYFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 133
           ++  +FFA F N     V ++ + I+Q+ +H K + +++IN        +IGK  F RF
Sbjct: 33  IDSPFFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91


>Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical
           protein T03F7.7a protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = -1

Query: 282 VEIGYFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 133
           ++  +FFA F N     V ++ + I+Q+ +H K + +++IN        +IGK  F RF
Sbjct: 33  IDSPFFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91


>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 79  GHLNNELQEIKSILVVMYESMEKHFSNVV---DEIDSLKTDTFMMLSNLQNNTIRTWDAV 249
           GH+  E  E +  L    E +++  SN+    ++++    D    ++NL+ +     +  
Sbjct: 137 GHIIQEFHERELDLARNVEILQEENSNLTAKNEKLEETVDDLHEKVANLETSNKELTEIN 196

Query: 250 VKNGKKISNLDEKI 291
           V N +KISN  ++I
Sbjct: 197 VDNERKISNSSDEI 210


>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = -2

Query: 257 FFTTASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCP 78
           FF   S+   + F K +  +NVS+L +++S + +   F ++ ++T    F+     F  P
Sbjct: 219 FFNFTSYFTTLFFFKTMPRLNVSIL-QTLSVSVM--FFLMNRHLTLIPQFLVSIKRFNFP 275

Query: 77  AYTK*PTKQM 48
            +   P+ +M
Sbjct: 276 KFNNFPSSKM 285


>Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical
           protein F59A1.13 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 287 FSSRLDIFLPFFTTASHVRIVLFCKLLNIINVSVL 183
           FS+   +F PF +  S++  V+FC++L  + VSV+
Sbjct: 74  FSALGTLFFPF-SVDSNIYAVIFCRVLQGLGVSVI 107


>U88171-1|AAB42251.2|  630|Caenorhabditis elegans Hypothetical
           protein F25F8.1 protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = -3

Query: 676 VCNKCAQQLVGKRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKRL 497
           V   C Q L G+ +RRS+  + + V V  +  ++       +  +   R + +++L+ RL
Sbjct: 67  VLRSCVQSLEGRCSRRSEVAHQQKVAVKQLVAKIEVILLNELSGYVERRNEPDRRLISRL 126

Query: 496 QRHF*ILINVIRVDPK 449
            R    LIN+   D +
Sbjct: 127 NRE---LINIDSKDDR 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,576
Number of Sequences: 27780
Number of extensions: 334412
Number of successful extensions: 999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)