Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k06
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit...    31   0.99 
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    30   1.7  
At5g01410.1 68418.m00054 stress-responsive protein, putative sim...    29   3.0  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   3.0  
At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR ...    28   7.0  
At5g47990.1 68418.m05929 cytochrome P450 family protein similar ...    28   7.0  
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    28   7.0  
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    28   7.0  

>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 170

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 112 SILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDA 246
           +IL ++ E  +KH  + VD+ D     T   ++    N +RTWDA
Sbjct: 50  NILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDA 94


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 133  ESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLD 282
            E++   F+NV D I  L +     LS  +   I TWD + K  +   NLD
Sbjct: 4343 ENLASIFANVKDVIGKLCSYKDGSLSQEEEMNITTWDGLFKKAENDLNLD 4392


>At5g01410.1 68418.m00054 stress-responsive protein, putative
           similar to ethylene-inducible protein HEVER [Hevea
           brasiliensis] SWISS-PROT:Q39963
          Length = 309

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = -1

Query: 363 LSDK*RLLNVKQVVNYPVFC**HVNFFVEIGYFFAIFYNCVPRSNRVILQVAQHHKRVRF 184
           +SD   +  +KQ V  PV     +  FVE     AI  + +  S  + L    HH     
Sbjct: 77  MSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTLADEDHHINKHN 136

Query: 183 KRINFV 166
            RI FV
Sbjct: 137 FRIPFV 142


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 512  LLFTIPSKHRKMINDAG--GSCHNTVKYMVDIYGASVLI 622
            LL T PS   ++I +    G CHN +KY+  +Y   +++
Sbjct: 932  LLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970


>At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 888

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = +1

Query: 73  YAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVV 252
           + GH+++    +  +LVV+  SM +   ++ +EI    +  ++ LS  +   IR W A +
Sbjct: 544 FLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTR---IRIWPAGL 600

Query: 253 KNGKKISNLD 282
              +K+  L+
Sbjct: 601 VELRKLLYLN 610


>At5g47990.1 68418.m05929 cytochrome P450 family protein similar to
           Cytochrome P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max];
          Length = 511

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 88  NNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIR-TWDAVVKNGK 264
           +++  ++  +L+  Y      +    D+I SL  D F   +    NTI+ T   ++KN K
Sbjct: 274 HHQTSDMLDMLLEAYGDENAEYKITRDQIKSLFVDLFSAGTEASANTIQWTMAEIIKNPK 333

Query: 265 KISNLDEKI 291
               L E+I
Sbjct: 334 ICERLREEI 342


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 206 NIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCPA 75
           N+IN+  L  S  S+ +E   SI +     +D   CSSL + P+
Sbjct: 377 NLINLKTLNLSGCSSLVELPSSIGNLNLKKLDLSGCSSLVELPS 420


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 569 CHNTVKYMVDIYGASVLILRTPC 637
           CH+T KY+   YG  +L+  T C
Sbjct: 857 CHDTAKYVSKRYGCDILLEDTRC 879


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,825
Number of Sequences: 28952
Number of extensions: 288843
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)