Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k05
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 260 8e-70
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.18
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.72
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 3.8
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 3.8
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.8
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 6.7
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 6.7
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 28 6.7
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 6.7
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 8.8
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 8.8
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 8.8
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 260 bits (637), Expect = 8e-70
Identities = 123/208 (59%), Positives = 148/208 (71%)
Frame = +2
Query: 98 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 277
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 278 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 457
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 60 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119
Query: 458 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 637
ARGH IEKI E+PLV++D ++ + KT AV L+ + A+ D+ K
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEK 179
Query: 638 VYKSQRLRAGKGKMRNRRRIQRKGPLII 721
S+++RAGKGKMRNRR + RKGPLII
Sbjct: 180 CIDSKKIRAGKGKMRNRRTVMRKGPLII 207
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 371 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 258
Y +HP T+ YH H R H Q+P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
Score = 32.7 bits (71), Expect = 0.31
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 371 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 264
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 362 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 261
HP T+ YH H R H Q+P + H + P
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHP 438
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 386 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 273
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.72
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 386 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 303
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 694 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 545
+T + HF KT R +H+K P E GL+D+LD G+ Q
Sbjct: 18 STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 395 TYVHHDTCYRRHPDRTYEYHHHGHA 321
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 3.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -2
Query: 398 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 294
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 275 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 391
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 194 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 319
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 293 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 421
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 386 HHDTCYRRHPDRTYEYHHH 330
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 165 GRGLAAPCTVSLFSEYTDTKGRATDRLI 82
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 310
RP +SM K R+PY + +E GH+ S T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 392 YVHHDTCYRRHPDRTYEYHHHGH 324
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 386 HHDTCYRRHPDRTYEYHHH 330
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 386 HHDTCYRRHPDRTYEYHHHGH 324
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 374 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 279
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 290 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 421
WG G+ + R GGG R G +G M GG P W R
Sbjct: 24 WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,176,379
Number of Sequences: 59808
Number of extensions: 464497
Number of successful extensions: 1487
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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