Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k05
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 243 1e-64
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 241 4e-64
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 30 1.4
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 30 1.4
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.4
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 3.1
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 3.1
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 5.5
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 28 5.5
At1g18670.1 68414.m02330 protein kinase family protein contains ... 28 5.5
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 7.2
At5g01010.1 68418.m00001 expressed protein 28 7.2
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 7.2
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 27 9.5
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 9.5
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 243 bits (594), Expect = 1e-64
Identities = 117/215 (54%), Positives = 143/215 (66%), Gaps = 2/215 (0%)
Frame = +2
Query: 83 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 256
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 257 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 436
K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 61 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120
Query: 437 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLK 616
ARGH IE +PE+PLVV+D + + KT A+ L+++
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180
Query: 617 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 721
A+ D K S +R GKGKMRNRR I RKGPL++
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVV 215
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 241 bits (589), Expect = 4e-64
Identities = 117/212 (55%), Positives = 139/212 (65%), Gaps = 2/212 (0%)
Frame = +2
Query: 92 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 265
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 266 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 445
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124
Query: 446 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWS 625
ARGH IE +PE+PLVV+D + + KT A+ L+++ A+
Sbjct: 125 MKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYD 184
Query: 626 DILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 721
D K S +R GKGKMRNRR I RKGPL++
Sbjct: 185 DAEKAKNSIGIRPGKGKMRNRRYISRKGPLVV 216
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 382 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 561
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 523
Query: 562 S 564
S
Sbjct: 524 S 524
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 382 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCCYRRPSARSG*RTHY*KDSRASLGCSRQ 561
WW +V LA+ APS P + L SR C P ++S + H D+ R
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC-PSPLSQSSKQHHIRLDNHFDTSTPRS 522
Query: 562 S 564
S
Sbjct: 523 S 523
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 107 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 253
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 398 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 279
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 398 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 279
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 158 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 253
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 158 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 253
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 588 CLVLLISWTLSATTKGSSGIFS 523
CLVLL+S +A TK SGIF+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFT 30
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 499 RSG*RTHY*KDSRASLGCSRQSPRDQQDQTGCHLPEAPQGMV*YP*GVQVSASS 660
R+G H DS ++L Q P + + H+ A QG V + +QVS SS
Sbjct: 491 RNGHSVHNSIDSDSTLFEKMQKPSNHEKDEASHVKNASQGDVPFSGPLQVSVSS 544
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 386 HHDTCYRRHPDRTYEYHHHGHAEF 315
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 283 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 152
+TG+ +L+ + VG+P+VL ++ I Q+ DG +E +RE G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 161 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 48
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 251 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 415
+ + G + +AE + + + ++P G G G+ G FGN GG F W
Sbjct: 81 IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 386 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 303
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,312,752
Number of Sequences: 28952
Number of extensions: 319972
Number of successful extensions: 1126
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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