Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k04
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 201 5e-52
05_03_0671 + 16831185-16831254,16832017-16832084,16832318-168323... 200 6e-52
11_08_0079 + 28189782-28189907,28190445-28190553,28190876-281909... 47 1e-05
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262... 47 2e-05
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225... 46 2e-05
07_01_0075 - 558829-560859 38 0.006
06_01_0668 - 4882174-4884204 38 0.006
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 35 0.071
08_02_0669 + 19868149-19870179 28 6.2
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 28 8.2
01_06_0191 - 27334412-27335155 28 8.2
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 201 bits (490), Expect = 5e-52
Identities = 99/146 (67%), Positives = 113/146 (77%), Gaps = 2/146 (1%)
Frame = +2
Query: 266 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGD--KGEGFDVLKSGDARVALIGFPS 439
ARTQKNKAT +HLGLLKAKLAK R +LL P+ KGG GEGFDV KSGDARV L+GFPS
Sbjct: 26 ARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGGGGGAGEGFDVTKSGDARVGLVGFPS 85
Query: 440 VGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGKGRGRQ 619
VGK E A+YEFTTLTCIPGVI Y+GA IQLLDLPGIIEGA GKGRGRQ
Sbjct: 86 VGKSTLLNKLTGTFSEVAAYEFTTLTCIPGVIMYKGAKIQLLDLPGIIEGAKDGKGRGRQ 145
Query: 620 VIAVARTADLVLMMLDATKPYVHRQL 697
VI+ ART +++L++LDA KP H++L
Sbjct: 146 VISTARTCNVILIVLDAIKPITHKRL 171
>05_03_0671 +
16831185-16831254,16832017-16832084,16832318-16832394,
16832910-16833090,16833192-16833248,16834182-16834256,
16834820-16834939,16835018-16835224
Length = 284
Score = 200 bits (489), Expect = 6e-52
Identities = 99/144 (68%), Positives = 113/144 (78%)
Frame = +2
Query: 266 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 445
ARTQKNKATEYHLG LKAK+AK R+QLLEP K G+GF+V K G RVALIGFPSVG
Sbjct: 15 ARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSTGGGDGFEVTKFGHGRVALIGFPSVG 74
Query: 446 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGKGRGRQVI 625
K EAASYEFTTLTCIPG+I+Y IQLLDLPGIIEGA++GKGRGRQVI
Sbjct: 75 KSTLLTMLTGTHSEAASYEFTTLTCIPGIIQYNDTKIQLLDLPGIIEGASEGKGRGRQVI 134
Query: 626 AVARTADLVLMMLDATKPYVHRQL 697
AVA+++DLVLM+LDA+K HRQ+
Sbjct: 135 AVAKSSDLVLMVLDASKSEGHRQI 158
>11_08_0079 +
28189782-28189907,28190445-28190553,28190876-28190958,
28191500-28191562,28191658-28192854,28193247-28193310,
28193338-28193426,28194404-28194463,28195442-28195547,
28196057-28196069,28196940-28197111
Length = 693
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 410 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRG-ANIQLLDLPGIIE 586
A V L+G P+ GK E A Y FTTL G + Y ++++ D+PG+I+
Sbjct: 340 ADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSLTYEDYFSVKVADIPGLIK 399
Query: 587 GAAQGKGRGRQVIAVARTADLVLMMLD 667
GA + +G G + ++ +LD
Sbjct: 400 GAHENRGLGHAFLRHIERTKVLAYVLD 426
>07_03_1626 +
28223967-28225294,28225506-28225779,28225939-28226230,
28226492-28226651,28226809-28226917,28227004-28227099
Length = 752
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 410 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR-GANIQLLDLPGIIE 586
A V ++G P+ GK A+Y FTTL GV+ A + + DLPG++E
Sbjct: 453 ADVGIVGAPNAGKSTLLTAISAAKPTIANYPFTTLLPNLGVVSLDFDATMVVADLPGLLE 512
Query: 587 GAAQGKGRGRQVIAVARTADLVLMMLDAT 673
GA +G G G + + + +++ ++D +
Sbjct: 513 GAHRGYGLGHEFLRHSERCSVLVHVVDGS 541
>03_06_0323 +
33121062-33121653,33121748-33121839,33122482-33122565,
33123126-33123203,33123500-33123700,33123821-33123928,
33124145-33124219,33124338-33124537,33124654-33124722,
33125159-33125279,33126840-33127120,33127522-33127594
Length = 657
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Frame = +2
Query: 410 ARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTC---------IPGVIEYRGANIQL 562
A V L+G P+ GK + A Y FTTL G +++ + L
Sbjct: 277 ADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRLGGDPALGALQF-SSEATL 335
Query: 563 LDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDA 670
DLPG+IEGA GKG GR + R +++ ++DA
Sbjct: 336 ADLPGLIEGAHLGKGLGRNFLRHLRRTRVIVHVVDA 371
>07_01_0075 - 558829-560859
Length = 676
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 407 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGII 583
+ R LI G+P+VGK + Y FTT + G +Y+ Q++D PGI+
Sbjct: 167 NTRTLLICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
Query: 584 EGAAQGKG--RGRQVIAVARTADLVLMMLD 667
+ + + + A+A VL LD
Sbjct: 227 DRPFEDRNIIEMCSITALAHLRAAVLFFLD 256
>06_01_0668 - 4882174-4884204
Length = 676
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 407 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGII 583
+ R LI G+P+VGK + Y FTT + G +Y+ Q++D PGI+
Sbjct: 167 NTRTLLICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGIL 226
Query: 584 EGAAQGKG--RGRQVIAVARTADLVLMMLD 667
+ + + + A+A VL LD
Sbjct: 227 DRPFEDRNIIEMCSITALAHLRAAVLFFLD 256
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 34.7 bits (76), Expect = 0.071
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 416 VALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGII 583
+ L+G P+VGK E SY FTT + G I Q+ D PG++
Sbjct: 247 LCLVGSPNVGKSSLVRILSSGKPEVCSYPFTTRGILMGHIVSNHERFQVTDTPGLL 302
>08_02_0669 + 19868149-19870179
Length = 676
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 539 YRGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLV 652
YRG L+ L G+++ A G GR AVA A L+
Sbjct: 511 YRGRKNALVSLYGVLQRGAGGHGRAVSAGAVAALASLL 548
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 464 SIKGSTYPQKESLSKQLEHH 405
++KG+T PQ E + Q++HH
Sbjct: 606 NLKGTTQPQPERVKNQVDHH 625
>01_06_0191 - 27334412-27335155
Length = 247
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 522 IHVSVVNS*LAASECV*VRVDKRVDLPTEGKPIKATRASPDFSTSKP 382
+ V+V N+ A VDK V LP E +KA A+P ST+KP
Sbjct: 158 VEVTVTNALSAVKPLAVYSVDK-VLLPFELFGVKAPAAAPTASTAKP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,949
Number of Sequences: 37544
Number of extensions: 265675
Number of successful extensions: 740
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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