Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k04
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36) 224 5e-59
SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05) 122 3e-28
SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31) 95 4e-20
SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26) 32 0.39
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19) 32 0.51
SB_50712| Best HMM Match : MMR_HSR1 (HMM E-Value=3.5) 29 3.6
SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) 28 6.3
>SB_14133| Best HMM Match : TGS (HMM E-Value=2.2e-36)
Length = 365
Score = 224 bits (548), Expect = 5e-59
Identities = 113/145 (77%), Positives = 121/145 (83%), Gaps = 1/145 (0%)
Frame = +2
Query: 266 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGD-KGEGFDVLKSGDARVALIGFPSV 442
ARTQKNKATEYHLGLLKAKLAKYR+QLLEP+K KG+GFDV+KSGDARVALIGFPSV
Sbjct: 15 ARTQKNKATEYHLGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSV 74
Query: 443 GKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGKGRGRQV 622
GK ASYEFTTLTCIPGVI Y GANIQLLDLPGIIEGAAQGKGRGRQV
Sbjct: 75 GKSTLLTKLTQTQSACASYEFTTLTCIPGVINYNGANIQLLDLPGIIEGAAQGKGRGRQV 134
Query: 623 IAVARTADLVLMMLDATKPYVHRQL 697
IAVARTADLVLMMLDA+K + ++L
Sbjct: 135 IAVARTADLVLMMLDASKGEIQKKL 159
>SB_43010| Best HMM Match : MMR_HSR1 (HMM E-Value=1.9e-05)
Length = 141
Score = 122 bits (294), Expect = 3e-28
Identities = 63/87 (72%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Frame = +2
Query: 266 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGD-KGEGFDVLKSGDARVALIGFPSV 442
ARTQKNKATEYHLGLLKAKLAKYR+QLLEP+K KG+GFDV+KSGDARVALIGFPSV
Sbjct: 15 ARTQKNKATEYHLGLLKAKLAKYRAQLLEPAKGSSSAKGDGFDVMKSGDARVALIGFPSV 74
Query: 443 GKXXXXXXXXXXXXEAASYEFTTLTCI 523
GK ASYEFTTLT I
Sbjct: 75 GKSTLLTKLTQTQSACASYEFTTLTGI 101
>SB_56785| Best HMM Match : TGS (HMM E-Value=6.2e-31)
Length = 303
Score = 95.5 bits (227), Expect = 4e-20
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = +2
Query: 386 FDVLKSGDARVALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLL 565
FDV K+GDAR+ +GFPSVGK E A+YEFTTLT +PGVI Y+GA IQLL
Sbjct: 41 FDVAKTGDARIGFVGFPSVGKSTLLTNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLL 100
Query: 566 DLPGIIEGAAQGK 604
DLPGIIEGA K
Sbjct: 101 DLPGIIEGAKMVK 113
>SB_7927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +2
Query: 407 DARVALI-GFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGII 583
+ R L+ GFP+VGK + Y FTT + G ++Y+ Q++D PG++
Sbjct: 82 NTRTLLVCGFPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHMDYKYLRWQVVDTPGVL 141
Query: 584 EGAAQGKG--RGRQVIAVARTADLVLMMLDATKPYVH 688
+ + + + + A+A VL + D ++ H
Sbjct: 142 DHPLEERNTIEMQAITALAHLRSAVLYVTDISEQCGH 178
>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
Length = 534
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = +2
Query: 560 LLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLDAT 673
L D+ G++ GA +G+G+G + + AD+++ ++DA+
Sbjct: 228 LKDVAGLVPGACEGRGKGNKFMNDLLDADVLIHVIDAS 265
>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
Length = 255
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 425 IGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLP 574
+GFP+ GK A+Y FTTL G++EY + Q+ ++P
Sbjct: 1 VGFPNAGKSTLLRAISRATPTVAAYPFTTLNPSVGMVEYDDFS-QIAEIP 49
>SB_50712| Best HMM Match : MMR_HSR1 (HMM E-Value=3.5)
Length = 94
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +2
Query: 533 IEYRGAN---IQLLDLPGIIEGAAQGKG 607
IEYR A+ I + DLPG++EGA +G
Sbjct: 49 IEYRSADTPYISVADLPGLVEGAHLNRG 76
>SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +2
Query: 551 NIQLLDLPGIIEGAAQGKGRGRQVIAV----ARTADLVLMMLDATK 676
+I ++D PGI+ G Q RG + A D ++++ DA K
Sbjct: 48 SITIVDTPGILSGEKQSVARGYDFTGILKWFAERCDRIILLFDAHK 93
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 413 RVALIGFPSVGKXXXXXXXXXXXXEAASYE-FTTLTCIPGVIEYRGANIQLLDLPGIIEG 589
+VA+IG P+ GK A + + TT GV G I LLD PG++
Sbjct: 41 KVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIILLDTPGLVT- 99
Query: 590 AAQGK 604
++GK
Sbjct: 100 QSEGK 104
>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
Length = 1440
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 420 ATRASPDF--STSKPSPLSPPFFEGSSNCD 337
+ +ASP F S S+ SP SPP GSS D
Sbjct: 221 SNKASPRFAISPSRDSPTSPPLRPGSSGSD 250
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,159
Number of Sequences: 59808
Number of extensions: 323404
Number of successful extensions: 749
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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