Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k04
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical p...   226   1e-59
Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical pr...   193   9e-50
AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical...   193   9e-50
U13875-6|AAK67213.1|  390|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z93385-2|CAB07637.1|  358|Caenorhabditis elegans Hypothetical pr...    48   9e-06
AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical...    46   3e-05
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    46   3e-05
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    28   5.6  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    27   9.8  

>L14745-12|AAR25659.1|  366|Caenorhabditis elegans Hypothetical
           protein C02F5.3 protein.
          Length = 366

 Score =  226 bits (552), Expect = 1e-59
 Identities = 109/137 (79%), Positives = 118/137 (86%)
 Frame = +2

Query: 266 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 445
           +RTQKNKATEYHLGLLKAKLAKYR QLLEP+ KGG KGEGFDV+KSGDARVA++GFPSVG
Sbjct: 15  SRTQKNKATEYHLGLLKAKLAKYRQQLLEPTGKGGAKGEGFDVMKSGDARVAMVGFPSVG 74

Query: 446 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGKGRGRQVI 625
           K            EAA YEFTTLTCIPGVI Y GANIQLLDLPGIIEGA+QGKGRGRQVI
Sbjct: 75  KSTLLSSMTSTHSEAAGYEFTTLTCIPGVISYNGANIQLLDLPGIIEGASQGKGRGRQVI 134

Query: 626 AVARTADLVLMMLDATK 676
           +VA+TADL+LMMLDA K
Sbjct: 135 SVAKTADLILMMLDAGK 151


>Z81134-8|CAB57908.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  193 bits (471), Expect = 9e-50
 Identities = 93/144 (64%), Positives = 106/144 (73%)
 Frame = +2

Query: 266 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 445
           ARTQKNKAT  HLG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVG
Sbjct: 15  ARTQKNKATNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVG 74

Query: 446 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGKGRGRQVI 625
           K            E A+YEFTTLT +PGVI Y+GA IQLLDLPGIIEGA  GKGRG+QVI
Sbjct: 75  KSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVI 134

Query: 626 AVARTADLVLMMLDATKPYVHRQL 697
           AVART  L+LM+LD  KP  H++L
Sbjct: 135 AVARTCSLILMVLDVMKPLQHKKL 158


>AL117202-33|CAB55097.1|  366|Caenorhabditis elegans Hypothetical
           protein T28D6.6 protein.
          Length = 366

 Score =  193 bits (471), Expect = 9e-50
 Identities = 93/144 (64%), Positives = 106/144 (73%)
 Frame = +2

Query: 266 ARTQKNKATEYHLGLLKAKLAKYRSQLLEPSKKGGDKGEGFDVLKSGDARVALIGFPSVG 445
           ARTQKNKAT  HLG+LKAKLAK R  L+ P   GG  GEGFDV K+GDAR+  +GFPSVG
Sbjct: 15  ARTQKNKATNAHLGILKAKLAKLRRDLITPKGGGGGPGEGFDVAKTGDARIGFVGFPSVG 74

Query: 446 KXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQGKGRGRQVI 625
           K            E A+YEFTTLT +PGVI Y+GA IQLLDLPGIIEGA  GKGRG+QVI
Sbjct: 75  KSTLLCNLAGVFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVI 134

Query: 626 AVARTADLVLMMLDATKPYVHRQL 697
           AVART  L+LM+LD  KP  H++L
Sbjct: 135 AVARTCSLILMVLDVMKPLQHKKL 158


>U13875-6|AAK67213.1|  390|Caenorhabditis elegans Hypothetical
           protein C26E6.12 protein.
          Length = 390

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
 Frame = +2

Query: 368 GDKGEGFDVLKSGDAR--VALIGFPSVGKXXXXXXXXXXXX-EAASYEFTTLTCIPGV-- 532
           G KG+ FDV      R  + L+GFP+ GK             + A Y FTT+   P V  
Sbjct: 146 GSKGDTFDVEIHLKLRPNIGLLGFPNAGKSTLLKALVPEKSVKIADYAFTTVN--PQVAF 203

Query: 533 --------IEYRGANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLD 667
                   +E     + + DLPGIIEGA+  +G+G + +     AD+V+M++D
Sbjct: 204 FKNKEEFSVEDPSFTLSIADLPGIIEGASMNRGKGYKFLKHLEYADIVVMVVD 256


>Z93385-2|CAB07637.1|  358|Caenorhabditis elegans Hypothetical
           protein M01E5.2 protein.
          Length = 358

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
 Frame = +2

Query: 377 GEGFDVLKSGDARV----ALIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYR 544
           GEG +++   + RV     L+GFP+ GK            + ASY FTTL    GV+ Y 
Sbjct: 174 GEGEELIYDVEMRVMATAGLVGFPNAGKSSLLRAISRAKPKVASYPFTTLHPHIGVVFYE 233

Query: 545 G-ANIQLLDLPGIIEGAAQGKGRGRQVIAVARTADLVLMMLD 667
               I + D+PG+IE +   KG G   +      + +  +LD
Sbjct: 234 DFEQIAVADIPGLIEDSHLNKGLGISFLKHIERCESLWYVLD 275


>AF036706-10|AAM97948.1|  633|Caenorhabditis elegans Hypothetical
           protein T07A9.9b protein.
          Length = 633

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 422 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQG 601
           L GFP+VGK            E   Y FTT     G ++YR    Q++D PGI++   + 
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYRFLRWQVIDTPGILDQPLED 233

Query: 602 KG--RGRQVIAVARTADLVLMMLDATK 676
           +     + V A+A     VL M+D ++
Sbjct: 234 RNTIEMQAVTALAHLKASVLFMMDVSE 260


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 422 LIGFPSVGKXXXXXXXXXXXXEAASYEFTTLTCIPGVIEYRGANIQLLDLPGIIEGAAQG 601
           L GFP+VGK            E   Y FTT     G ++YR    Q++D PGI++   + 
Sbjct: 174 LCGFPNVGKSSFINNVTRADVEVQPYAFTTKALYVGHLDYRFLRWQVIDTPGILDQPLED 233

Query: 602 KG--RGRQVIAVARTADLVLMMLDATK 676
           +     + V A+A     VL M+D ++
Sbjct: 234 RNTIEMQAVTALAHLKASVLFMMDVSE 260


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 541 IFYNSRYTCKCCEFITC 491
           + +N RY+C+CC +  C
Sbjct: 47  VSFNKRYSCRCCRYEKC 63


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 444 PTEGKPIKATRASPDFSTSK-PSPLSPP 364
           P EG P  A   +P  STS+ P PL PP
Sbjct: 24  PREGAPPPAPPLAPGASTSQAPPPLQPP 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,228
Number of Sequences: 27780
Number of extensions: 250182
Number of successful extensions: 763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)