Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k03
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.7  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    21   8.9  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 622 SIPSSSSPFDAQAFSWKAFSSLGH 551
           SI +S +PF  Q F+    S LGH
Sbjct: 245 SIHNSINPFLGQGFAVPGLSPLGH 268


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 166 RKMPLRRAVRYLKNVIEKKECIPFR 240
           R +PLR AV ++ ++I     +P R
Sbjct: 59  RALPLRSAVEHIPDLIADSRRLPLR 83


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 216 KERVYSIPSLQRRRWSLCSSKAVW-HNTGSLAQEIR 320
           K+ +  +PS +R  W  C   A W    GSL +  R
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSSR 152


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 216 KERVYSIPSLQRRRWSLCSSKAVW-HNTGSLAQEIR 320
           K+ +  +PS +R  W  C   A W    GSL +  R
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSSR 152


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 216 KERVYSIPSLQRRRWSLCSSKAVW-HNTGSLAQEIR 320
           K+ +  +PS +R  W  C   A W    GSL +  R
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSSR 152


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +3

Query: 216 KERVYSIPSLQRRRWSLCSSKAVW-HNTGSLAQEIR 320
           K+ +  +PS +R  W  C   A W    GSL +  R
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSSR 152


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 293 HRVAGPRNPPNSSCSY 340
           H+  GPR+PP+ S  +
Sbjct: 352 HQNFGPRHPPDCSMEF 367


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 91  QGYPAPESNDP*LFLSRENMTR 26
           Q YP PE  DP  FL    + R
Sbjct: 98  QVYPDPEKFDPDRFLPENCLKR 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,244
Number of Sequences: 336
Number of extensions: 3244
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)