Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k03
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   4.8  
L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.       23   6.4  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    23   8.4  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   8.4  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 304  WPKKSAEFLLQLLRNAESNADNKTLDVDRLVI---DHIQVNRAPCLR 435
            W +   E+L  L + A+ N +  +++  RLVI   D++ V++ P  R
Sbjct: 1641 WNRWHREYLSTLQKRAKWNKNAISIEPGRLVILQEDNVAVSKWPMAR 1687


>L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 390 ASHRPHSGKSRALPTQTYIPCSRS 461
           A+ RPH  K + L  Q   PC +S
Sbjct: 112 AAKRPHMKKKKVLFHQDNAPCHKS 135


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 396 HRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQ 509
           HR  +G+S   P+   +  ++ HQ +    L +R +S+
Sbjct: 195 HRQEAGQSLKGPSNNMLQANKPHQQVDEHELKNRIISK 232


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 180 PSCCSLPQKRD*KERVYSIPSLQRRRWSLC 269
           PS   L   R     VYS+    RRRWSLC
Sbjct: 9   PSGARLSISRGSPTGVYSV----RRRWSLC 34


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,614
Number of Sequences: 2352
Number of extensions: 14006
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)