Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k03
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X53777-1|CAA37793.1| 184|Homo sapiens protein ( Human L23 mRNA ... 258 1e-68
BC106031-1|AAI06032.1| 184|Homo sapiens ribosomal protein L17 p... 258 1e-68
BC066323-1|AAH66323.1| 184|Homo sapiens ribosomal protein L17 p... 258 1e-68
BC017831-1|AAH17831.1| 184|Homo sapiens ribosomal protein L17 p... 258 1e-68
BC000502-1|AAH00502.1| 184|Homo sapiens ribosomal protein L17 p... 258 1e-68
AB061824-1|BAB79462.1| 184|Homo sapiens ribosomal protein L17 p... 258 1e-68
BC066324-1|AAH66324.1| 184|Homo sapiens ribosomal protein L17 p... 255 1e-67
AK130593-1|BAC85391.1| 136|Homo sapiens protein ( Homo sapiens ... 78 2e-14
AY129010-1|AAM98753.1| 198|Homo sapiens unknown protein. 32 2.1
BX119957-17|CAM25921.1| 433|Homo sapiens chromosome 6 open read... 30 8.3
BC064397-1|AAH64397.1| 433|Homo sapiens C6orf136 protein protein. 30 8.3
AL732442-10|CAI17760.2| 433|Homo sapiens chromosome 6 open read... 30 8.3
AL662800-21|CAI95540.2| 433|Homo sapiens chromosome 6 open read... 30 8.3
AL662798-7|CAI95541.2| 433|Homo sapiens chromosome 6 open readi... 30 8.3
>X53777-1|CAA37793.1| 184|Homo sapiens protein ( Human L23 mRNA for
putative ribosomal protein. ).
Length = 184
Score = 258 bits (632), Expect = 1e-68
Identities = 116/159 (72%), Positives = 139/159 (87%)
Frame = +1
Query: 58 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 238 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 417
RR+NGGVGRCAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ K LDVD LVI+HIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 418 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 534
+AP +RRRTYRAHGRINPYMSSPCHIE+ L+E+E V +
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
>BC106031-1|AAI06032.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 258 bits (632), Expect = 1e-68
Identities = 116/159 (72%), Positives = 139/159 (87%)
Frame = +1
Query: 58 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 238 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 417
RR+NGGVGRCAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ K LDVD LVI+HIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 418 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 534
+AP +RRRTYRAHGRINPYMSSPCHIE+ L+E+E V +
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
>BC066323-1|AAH66323.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 258 bits (632), Expect = 1e-68
Identities = 116/159 (72%), Positives = 139/159 (87%)
Frame = +1
Query: 58 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 238 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 417
RR+NGGVGRCAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ K LDVD LVI+HIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 418 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 534
+AP +RRRTYRAHGRINPYMSSPCHIE+ L+E+E V +
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
>BC017831-1|AAH17831.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 258 bits (632), Expect = 1e-68
Identities = 116/159 (72%), Positives = 139/159 (87%)
Frame = +1
Query: 58 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 238 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 417
RR+NGGVGRCAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ K LDVD LVI+HIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 418 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 534
+AP +RRRTYRAHGRINPYMSSPCHIE+ L+E+E V +
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
>BC000502-1|AAH00502.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 258 bits (632), Expect = 1e-68
Identities = 116/159 (72%), Positives = 139/159 (87%)
Frame = +1
Query: 58 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 238 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 417
RR+NGGVGRCAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ K LDVD LVI+HIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 418 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 534
+AP +RRRTYRAHGRINPYMSSPCHIE+ L+E+E V +
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
>AB061824-1|BAB79462.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 258 bits (632), Expect = 1e-68
Identities = 116/159 (72%), Positives = 139/159 (87%)
Frame = +1
Query: 58 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 238 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 417
RR+NGGVGRCAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ K LDVD LVI+HIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 418 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 534
+AP +RRRTYRAHGRINPYMSSPCHIE+ L+E+E V +
Sbjct: 121 KAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159
>BC066324-1|AAH66324.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 255 bits (624), Expect = 1e-67
Identities = 115/159 (72%), Positives = 138/159 (86%)
Frame = +1
Query: 58 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
M RYS +P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PF
Sbjct: 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPF 60
Query: 238 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 417
RR+NGGVGRCAQAKQ+G TQGRWPKKSAEFLL +L+NAESNA+ K LDVD LVI+HIQVN
Sbjct: 61 RRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVN 120
Query: 418 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 534
+AP +RRRTYRA GRINPYMSSPCHIE+ L+E+E V +
Sbjct: 121 KAPKMRRRTYRARGRINPYMSSPCHIEMILTEKEQIVPK 159
>AK130593-1|BAC85391.1| 136|Homo sapiens protein ( Homo sapiens
cDNA FLJ27083 fis, clone SPL03425. ).
Length = 136
Score = 78.2 bits (184), Expect = 2e-14
Identities = 36/70 (51%), Positives = 51/70 (72%)
Frame = +1
Query: 307 PKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSP 486
PK+ F L+ +SNA+ K LD+D L+I+ IQVN+AP + TYRAHG+INPY++S
Sbjct: 21 PKRVLNFCCTCLK-MQSNAEFKVLDIDSLIIEPIQVNKAPKMHCWTYRAHGQINPYVTSA 79
Query: 487 CHIEVCLSER 516
CHIE+ L+E+
Sbjct: 80 CHIEMILTEK 89
>AY129010-1|AAM98753.1| 198|Homo sapiens unknown protein.
Length = 198
Score = 31.9 bits (69), Expect = 2.1
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 381 RGQASHRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHR-SMSQRTRR 521
R +S R HS S+ L +Q++ P SRSH P PH S S R+ R
Sbjct: 89 RACSSRRAHSSWSQNLHSQSHSPHSRSHSPHSRSHSPHSWSHSLRSSR 136
>BX119957-17|CAM25921.1| 433|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 433
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 378 GRGQASHRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQRTRRCCRQG 536
GRG+ P + SR+ P QT P R QP ++L RS + C R G
Sbjct: 67 GRGREIRSPAAAPSRSSPAQTR-PAGRPQQPAR-LALGERSWQEGRPVCTRFG 117
>BC064397-1|AAH64397.1| 433|Homo sapiens C6orf136 protein protein.
Length = 433
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 378 GRGQASHRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQRTRRCCRQG 536
GRG+ P + SR+ P QT P R QP ++L RS + C R G
Sbjct: 67 GRGREIRSPAAAPSRSSPAQTR-PAGRPQQPAR-LALGERSWQEGRPVCTRFG 117
>AL732442-10|CAI17760.2| 433|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 433
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 378 GRGQASHRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQRTRRCCRQG 536
GRG+ P + SR+ P QT P R QP ++L RS + C R G
Sbjct: 67 GRGREIRSPAAAPSRSSPAQTR-PAGRPQQPAR-LALGERSWQEGRPVCTRFG 117
>AL662800-21|CAI95540.2| 433|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 433
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 378 GRGQASHRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQRTRRCCRQG 536
GRG+ P + SR+ P QT P R QP ++L RS + C R G
Sbjct: 67 GRGREIRSPAAAPSRSSPAQTR-PAGRPQQPAR-LALGERSWQEGRPVCTRFG 117
>AL662798-7|CAI95541.2| 433|Homo sapiens chromosome 6 open reading
frame 136 protein.
Length = 433
Score = 29.9 bits (64), Expect = 8.3
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 378 GRGQASHRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHRSMSQRTRRCCRQG 536
GRG+ P + SR+ P QT P R QP ++L RS + C R G
Sbjct: 67 GRGREIRSPAAAPSRSSPAQTR-PAGRPQQPAR-LALGERSWQEGRPVCTRFG 117
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,004,489
Number of Sequences: 237096
Number of extensions: 1969353
Number of successful extensions: 8216
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8216
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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