Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k03
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 250 5e-67
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 142 2e-34
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 30 1.6
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 3.8
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical... 28 6.7
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 27 8.8
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 250 bits (613), Expect = 5e-67
Identities = 118/163 (72%), Positives = 136/163 (83%)
Frame = +1
Query: 67 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 246
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Query: 247 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 426
+GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 66 HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125
Query: 427 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 555
LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++ PTDDA
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 142 bits (344), Expect = 2e-34
Identities = 86/163 (52%), Positives = 101/163 (61%)
Frame = +1
Query: 67 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 246
YSR P+N KSCKARGS+LRVHFKNT+E A M LR +P RR
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46
Query: 247 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 426
+ + K+ + L LL+NAESNA+ K LDVD LVI+HI V RA
Sbjct: 47 QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97
Query: 427 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 555
LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++ PTDDA
Sbjct: 98 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 138
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -2
Query: 628 LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 467
L+S + F + A+ +A ++L H+ L HL + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 304 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 465
W K+ + LL AE++ + D+D++V I + P L R +R +G
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547
Query: 466 NPYMSSPCHIEVCLSER 516
NP+ SPC ++ S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -2
Query: 493 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACPRPKFCC 365
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
>AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical
protein Y39B6A.48 protein.
Length = 186
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = -3
Query: 330 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTERHLPDC 160
E FG G ++ C S + + + ++ T +++ VF + +ER +P
Sbjct: 30 ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89
Query: 159 HCGLICVLKVNTEV*TTRFA*FRRVIR-LPRVTTHNY 52
CG +CV + +V F F+ + L RV H +
Sbjct: 90 MCGSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRHGF 126
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = -3
Query: 240 TEWN---TLFLFNHVF--EVTNSTTERHLPDCHCGLICVLKVNTEV*TTRFA*FRRVIR- 79
T W T +++ VF + +ER +P CG +CV + +V F F+ +
Sbjct: 21 TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 80
Query: 78 LPRVTTHNY 52
L RV H +
Sbjct: 81 LDRVLRHGF 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,788,846
Number of Sequences: 27780
Number of extensions: 309725
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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