Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k03
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   223   6e-59
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   223   1e-58
At3g15530.2 68416.m01969 expressed protein                             29   2.0  
At3g15530.1 68416.m01968 expressed protein                             29   2.0  
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    28   4.7  
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono...    28   4.7  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    27   8.2  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    27   8.2  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  223 bits (546), Expect = 6e-59
 Identities = 110/164 (67%), Positives = 129/164 (78%), Gaps = 1/164 (0%)
 Frame = +1

Query: 58  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
           M +YS+EPDN  KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 238 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 414
            RF  GVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 415 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 546
           N+A   RRRTYRAHGRINPYMS+PCHIE+ LSE+E+ V +   T
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  223 bits (544), Expect = 1e-58
 Identities = 109/164 (66%), Positives = 129/164 (78%), Gaps = 1/164 (0%)
 Frame = +1

Query: 58  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 237
           M +YS+EPDN  KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 238 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 414
            RF  GVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 415 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 546
           N+A   RRRTYRAHGRINPYMS+PCHIE+ LSE+E+ V +   T
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164


>At3g15530.2 68416.m01969 expressed protein
          Length = 288

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -1

Query: 641 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 537
           LLF+ + +SL+    +  F +  FFL+SFF +GA+ + A
Sbjct: 28  LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66


>At3g15530.1 68416.m01968 expressed protein
          Length = 288

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = -1

Query: 641 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 537
           LLF+ + +SL+    +  F +  FFL+SFF +GA+ + A
Sbjct: 28  LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 319 RISWASDPVLCQTALLEHSD 260
           R+SWASD +LCQ  L    D
Sbjct: 9   RVSWASDSMLCQVKLFLSDD 28


>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
           splice site at exon 1, unknown (C40) protein, Homo
           sapiens, EMBL:AF103798
          Length = 441

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
 Frame = +1

Query: 139 NTYETAMAIRKMPLR--RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPK 312
           N Y  A+    M L     V  L   +E  +          +  C  AKQ    Q R  +
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENAKQDKYMQNRLVR 392

Query: 313 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 438
               FL  L+RN   N  +  ++V    I+  +V  A  L R
Sbjct: 393 LVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLFR 434


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 287 AQHRVAGPRNPPNSSCSY 340
           AQ   A P++PP+SSCS+
Sbjct: 765 AQGTAAAPKSPPSSSCSH 782


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 70   SREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKE 225
            SR+P     S       + VH +N Y   +    +P R +++ + N+IEK E
Sbjct: 1222 SRKPGRVIDSVYYENVRVLVHEENIYR--LECSSLPSRLSIQLMDNIIEKPE 1271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,976,588
Number of Sequences: 28952
Number of extensions: 289718
Number of successful extensions: 739
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)