Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k02
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    27   0.16 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    27   0.16 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    27   0.16 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.37 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.50 
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    25   0.65 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    25   0.65 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    25   0.65 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.6  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -2

Query: 239 FSGISLIETISPVVFLNFLSCLRKYQKRDLATIGSGEKILILYKGGLGSFSEGSLRPITS 60
           FS + L  T SP      LS + KYQ R L    S  + L      + +F E     +T+
Sbjct: 121 FSRVKLTNTCSPPQGQLVLSSMHKYQPRILIVKASTAQALGWAPTNVFTFPETQFIAVTA 180

Query: 59  Y 57
           Y
Sbjct: 181 Y 181


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 539 LYAKVLSLL*WCTRLGNGNLMVLLWNCLT 453
           +Y K LS L W  R GNG LM+  W  +T
Sbjct: 583 IYFKWLSFLSWF-RYGNGALMINQWENVT 610


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 539 LYAKVLSLL*WCTRLGNGNLMVLLWNCLT 453
           +Y K LS L W  R GNG LM+  W  +T
Sbjct: 583 IYFKWLSFLSWF-RYGNGALMINQWENVT 610


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 444 PSTGQTVPQQHHQIPIAQTCAPL 512
           PS G T P+   +IP+A   APL
Sbjct: 73  PSDGTTSPEPDPEIPVAPEPAPL 95


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 13  QIKTPKMKAKGQLREYEVIGRKLPSENEPKPPLYKMR 123
           Q  TP  +  G + E +      P+EN P  P YK++
Sbjct: 416 QRSTPSPRVYGNVNENQDCST--PTENSPTKPYYKLK 450


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 257 LILMGLFSGISLIETISPVVFLNFLSCLR 171
           LIL  L   + ++ET++P+ F++F   LR
Sbjct: 40  LILKVLVDQVMILETMTPLDFMDFRCYLR 68


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 257 LILMGLFSGISLIETISPVVFLNFLSCLR 171
           LIL  L   + ++ET++P+ F++F   LR
Sbjct: 100 LILKVLVDQVMILETMTPLDFMDFRCYLR 128


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 257 LILMGLFSGISLIETISPVVFLNFLSCLR 171
           LIL  L   + ++ET++P+ F++F   LR
Sbjct: 100 LILKVLVDQVMILETMTPLDFMDFRCYLR 128


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 455 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCN 565
           S+  ++   D + PN      DL PS   G +  SC+
Sbjct: 136 SSPMSSGSYDPYSPNGKIGREDLSPSSLNGYSADSCD 172



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 566 NYKK*VLGLLYAKVLSLL*WCTRLGNGN 483
           N +K   G ++AK+LS+L     LGN N
Sbjct: 494 NRRKPKPGTIFAKLLSVLTELRTLGNQN 521


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,042
Number of Sequences: 336
Number of extensions: 3297
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)