Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k02
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 176 2e-45
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 176 2e-45
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.53
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 28 1.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 3.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 4.9
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 6.5
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 6.5
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 6.5
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 6.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 8.6
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 8.6
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 176 bits (428), Expect = 2e-45
Identities = 89/174 (51%), Positives = 114/174 (65%), Gaps = 4/174 (2%)
Frame = +1
Query: 49 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 228
L+EY+V+GRK+P+E+EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 229 XXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 408
FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I
Sbjct: 63 ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122
Query: 409 IK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 558
+K VEV K RR VKQ N ++FPLP R V FA RPST++
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 176 bits (428), Expect = 2e-45
Identities = 89/174 (51%), Positives = 114/174 (65%), Gaps = 4/174 (2%)
Frame = +1
Query: 49 LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXX 228
L+EY+V+GRK+P+E+EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 229 XXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 408
FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I
Sbjct: 63 ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122
Query: 409 IK-VEVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 558
+K VEV K RR VKQ N ++FPLP R V FA RPST++
Sbjct: 123 LKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.1 bits (62), Expect = 0.53
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 128 SLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRK---APSRLRTLVSGYAMSL 289
S ++ P++V S D+ + SRRP + S RKF K PS ++L G SL
Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSL 351
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 370 PYLYSTE*QLHLHSGHGIHGTCCVHPNETHSVARYQSS*S*WGFSLEF 227
P L S+ +LHSG HG HP+ S+ S S SL+F
Sbjct: 125 PSLLSSNATSYLHSGSSPHGNTSNHPSPISSLESLPSRSSTGSGSLDF 172
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 348 HSVL*RYGS*TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQH 476
HS R G+ T + +L + + SN G + TG T+P H
Sbjct: 99 HSASPRQGNNTGANGALFSQSTNSSNSGSYRNSVTGATLPNAH 141
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 52 REYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWY 168
+E V+ + E P +R +SP+ ++ S FWY
Sbjct: 470 QEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 136 DPIVAKSRFWYFLRQLKKFK 195
D ++ RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 159 TRFGDNWIRRENSHFIQGRLGLVLRRELAADN 64
++F DN++ ++ R+G+ L REL D+
Sbjct: 3 SQFNDNFVATDDDVGTMARVGMALDRELNGDS 34
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 489 WESDGAVVELFDLWTATRSSLDY 421
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 369 GS*TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 521
G+ +QSP+S + SNQ +SPST + HH + +P T
Sbjct: 93 GNSSQSPTSPHP-----SNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPT 138
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 207 TSGLLELLKLSQEIPETRFGDNWIRRENSH 118
TSG L LL E PE+ G+ + R + H
Sbjct: 1274 TSGNLRLLAYDPENPESHSGERLVTRGDFH 1303
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Frame = +1
Query: 103 PPLYKMRIFSPDPIVAKSRFWYFL 174
PP + P + K +FWY++
Sbjct: 534 PPKSNAELVDPSTLSGKDKFWYYI 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,365
Number of Sequences: 5004
Number of extensions: 51982
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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