Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10k02
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   204   4e-53
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      30   1.1  
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  204 bits (498), Expect = 4e-53
 Identities = 92/176 (52%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
 Frame = +1

Query: 34  KAKGQ-LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 210
           KA G+ L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 211 IVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 390
           I+              N+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 391 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 558
           A  I I+KV+ +KA   +R  +K FH++ IRFPLP RV   K L+ F   R +T+F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 452 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 598
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 452 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM 598
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 381 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 509
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 381 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 509
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 378 TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 509
           +Q  +S N D+ +G  +GCCV     +  P  +H       C P
Sbjct: 387 SQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHPPQAQSNCYP 429


>Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical
           protein W09D12.3 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -1

Query: 240 FLWNFLNRDNFTSGLLELLKLSQEIPETRFGDNWIRRENSHFIQGRLGLVLRRELAADNL 61
           F   F++R N ++    L+++   +  T + ++W+     +F  GR  L+         L
Sbjct: 23  FCLPFVDRKNLSNPFYRLVQIDIFVNITCYINSWLAIRLEYFEIGRTFLIFLESSLPGCL 82

Query: 60  IFSQLSFSLHF 28
             S+L  SL+F
Sbjct: 83  TLSKLFVSLYF 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,295,141
Number of Sequences: 27780
Number of extensions: 299646
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)