Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k02
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 170 5e-43
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 169 9e-43
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 167 7e-42
At2g35200.1 68415.m04317 expressed protein 30 1.0
At3g43870.1 68416.m04696 hypothetical protein 29 1.8
At3g57460.1 68416.m06397 expressed protein weak similarity to SP... 29 2.4
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 28 4.2
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 27 7.3
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 170 bits (414), Expect = 5e-43
Identities = 71/149 (47%), Positives = 105/149 (70%)
Frame = +1
Query: 46 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 225
+L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G+++
Sbjct: 5 RLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAIN 64
Query: 226 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 405
NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 406 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 492
IIK + A+ C+R KQFHNS I+FPL
Sbjct: 125 IIKTATVPASLCKRESTKQFHNSKIKFPL 153
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 169 bits (412), Expect = 9e-43
Identities = 72/149 (48%), Positives = 103/149 (69%)
Frame = +1
Query: 46 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 225
+ +Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
Query: 226 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 405
NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 406 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 492
IIK + A C+R KQFHNS I+FPL
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPL 153
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 167 bits (405), Expect = 7e-42
Identities = 70/149 (46%), Positives = 101/149 (67%)
Frame = +1
Query: 46 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 225
+ +Y+V+GR LP+EN+ P +Y+M+++ + + AKS+FWYF+R+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64
Query: 226 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 405
N+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124
Query: 406 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 492
IIK + A C+R KQFHNS I+FPL
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPL 153
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 124 IFSPDPIVAKSRFWYFLRQLKKFKKT 201
+FSP P+ +K WYF +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185
>At3g43870.1 68416.m04696 hypothetical protein
Length = 187
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 182 SCLRKYQKRDLATIGSGEKILILYKGGLGSFSEGSLRPITSYSLNCPLAFI 30
SC ++++ D+ TIG + KG + G +R T Y LN + F+
Sbjct: 4 SCFKEFRVADILTIGFKLHPYLTLKGLIEMKRRGLIRDTTGYILNGGITFL 54
>At3g57460.1 68416.m06397 expressed protein weak similarity to
SP|O43847 Nardilysin precursor (EC 3.4.24.61)
(N-arginine dibasic convertase) {Homo sapiens}
Length = 356
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 454 VKQFHNSTIRFPLPKRVHHYK 516
+KQ HN T+ +P+ +HHY+
Sbjct: 44 IKQGHNLTVSWPVTPSIHHYE 64
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 37 AKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 204
AKG ++ + +LPS +EP PP R F D V+ + W R KK TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 194 LNFLSCLR-KYQKRDLATIGSGEKILILYKGGLGSFSE 84
LNF++ L+ ++Q+ D +GS I+ +YK G S E
Sbjct: 374 LNFMNKLKTRFQRIDTHVVGSFHSIMTMYKEGKKSRKE 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522,656
Number of Sequences: 28952
Number of extensions: 281167
Number of successful extensions: 767
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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