Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k01
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 35 0.076
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 30 1.6
02_05_0891 - 32554355-32555305 30 2.2
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 2.8
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.8
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 3.8
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 3.8
01_01_1119 + 8882481-8882687,8882793-8882933,8883024-8883143,888... 29 3.8
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466... 29 5.0
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 5.0
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 28 6.6
07_01_0245 - 1803170-1803887,1803971-1804641 28 6.6
05_03_0307 + 12027505-12027565,12028300-12028925 28 8.7
01_06_1510 - 37859664-37861319 28 8.7
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 34.7 bits (76), Expect = 0.076
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Frame = +3
Query: 492 KIDDLTQKLTVANADLA--EA-NRSLILFANEMIVARRDAETARQDCENARRET-AQLAN 659
+ID+L KLT +AD+A EA N L+ A E A ++ T +D E+A RE+ A+ A
Sbjct: 244 EIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRESAAREAA 303
Query: 660 RMAD 671
R+A+
Sbjct: 304 RVAE 307
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +3
Query: 162 AKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVLIT 341
++D++ S K + R + GK T E+ Q+ H + +LH VL+T
Sbjct: 677 SRDVSRS-KDMRFFRPLHCLSHGKQMPTAEYTSQLPGHVDEGDQGVNAMQWLHKEPVLVT 735
Query: 342 KS--GVIQLIMKSKLPYAIELQEWLLEEVI 425
S G +I+K +P I + L +E+I
Sbjct: 736 VSGDGRFYIIVKVGVPTLIGVSHILSQEMI 765
>02_05_0891 - 32554355-32555305
Length = 316
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 260 PNPAPCSR*RGKAGRPAVFAPTHSAHYQIWRDSTDNEVQI 379
PNPAP G P V +P A ++IW ST++EV+I
Sbjct: 112 PNPAPKQGAEGNG--PKVSSPKRQAFHRIW--STEDEVRI 147
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 563 FVCQRNDCGSTRR*NGSARLRKRAP 637
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 353 HARFGNEHCVWVQIQRVALLCHA 285
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 577 SLANKMSDRLASAKSALATVNFCVRSSILAITSFVSISTAGAYL 446
+L +SD LAS S+LA V +++ A+ S S S++ +Y+
Sbjct: 44 TLRASLSDLLASIPSSLALVGPAAAAAVAAVASSFSSSSSSSYV 87
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 498 DDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADI 674
DDLT+K+ VAN + + +L F RQ E RRE + R+ ++
Sbjct: 1038 DDLTKKVEVANENFKQLKDTLKSFEESTKGLETSLMMERQQNEANRREVGEAQQRVEEL 1096
>01_01_1119 +
8882481-8882687,8882793-8882933,8883024-8883143,
8883789-8883884,8884076-8884189
Length = 225
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 700 WGLAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALAT 521
W ++ + +A LA A +R++ RAVSA+ A +SLA + S LA
Sbjct: 4 WVVSGVAFWWTAFLLARGAFPKRSYDFCNRAVSAAHAAAAVSLACLSVADWSRPLSPLAA 63
Query: 520 VNFCVRSSILAIT-SFVSISTAGAYL 446
+ + LA+T S++ A YL
Sbjct: 64 ASSPPQMKALAVTLSYMVYDAACCYL 89
>09_04_0162 +
15245354-15245458,15245558-15245629,15245793-15246617,
15247787-15248474,15248805-15248821
Length = 568
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = +3
Query: 372 SKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEAN 551
+KLP ++ W L++ ++ PA +++N ++ + + L+QK+ D ++
Sbjct: 410 TKLPEKYFIERWRLKDKNHELFVPNTLMPAAVLESNPLL-RFNILSQKMIKLALDASKTK 468
Query: 552 RSLILFANE 578
+ + NE
Sbjct: 469 ENFVYVMNE 477
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/97 (22%), Positives = 44/97 (45%)
Frame = +3
Query: 390 IELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILF 569
++L++ L+E V + CT K ++E+DT K+ D+ + ++ I
Sbjct: 688 LKLKDLLIEAVALKWSCTQKNMASIELDT------------KIWEMEKDVKKLEKNAIEA 735
Query: 570 ANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 680
A E +R + +Q NA++ +A D+A+
Sbjct: 736 AKEYENCKRKTQEHKQQLSNAKQHAESIAMITEDLAK 772
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 435 LCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETAR 614
L + + A + N++ D T++L A ++ + +L A E ARR E
Sbjct: 132 LLSDELATQFDRCKNEMARMFQDHTERLRRALGEVRRRHYRSLLGAAEAAAARRMRE-KE 190
Query: 615 QDCENARRETAQLANRMA 668
+ NA R A+L R+A
Sbjct: 191 AEASNAARRGAELEERVA 208
>07_01_0245 - 1803170-1803887,1803971-1804641
Length = 462
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -3
Query: 324 VGANTAGRPALPRYLEHGAGFGRHAQTSICTCRRRGHVLP 205
VG + P PR GAG G H TS C C+ R + LP
Sbjct: 11 VGNLSLKMPVAPR--PAGAGAGVHPSTSPCYCKIRLNKLP 48
>05_03_0307 + 12027505-12027565,12028300-12028925
Length = 228
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +2
Query: 515 IDGGQRRFGGSQPIAHFVCQRNDCGSTRR*NGSARLRKRAPRNGAAGQPHGGHCARRD 688
+ GG R GG+ V +R + +R SA R A AAG GG AR D
Sbjct: 101 VAGGGHRHGGA------VAKRGEGKGEKRRRSSAHPRSTATTKKAAGAEEGGGAARVD 152
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 317 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 409
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,054,122
Number of Sequences: 37544
Number of extensions: 521105
Number of successful extensions: 1712
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1709
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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