Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10k01
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 36 0.029
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 36 0.029
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 36 0.029
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 36 0.029
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 36 0.029
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 36 0.029
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 33 0.21
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 33 0.21
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 28 5.9
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 28 5.9
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 28 5.9
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAE 605
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAE 605
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4226
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAE 605
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAE 605
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAE 605
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4176 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4226
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAE 605
A + N +I KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4816 ANVISAGANAIIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 501 DLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 680
DL +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 681 DV 686
+
Sbjct: 1362 SI 1363
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 501 DLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 680
DL +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 681 DV 686
+
Sbjct: 1362 SI 1363
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 501 DLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 680
DL +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 681 DV 686
+
Sbjct: 1362 SI 1363
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +3
Query: 495 IDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADI 674
+D+ +K A++ ++ R A E R E + + E +RE LA + DI
Sbjct: 1463 LDEWRRKCEALVAEVEQSQRETRAAATETFRLRNQLEESGEQTEAVKRENKALAQELKDI 1522
Query: 675 AQDV 686
A +
Sbjct: 1523 ADQL 1526
>Z69385-1|CAA93424.2| 515|Caenorhabditis elegans Hypothetical
protein ZK593.1 protein.
Length = 515
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 337 MSTVCGCKYSGSPCFATLSGAWCWIWSACSNVDLY--LPSTWTRIARSQFTY 188
+S +CG + S P +G C I ACS+V+ + +T IAR F++
Sbjct: 18 ISHLCGLRISERPQKTRKTGVICTIGPACSDVETLRKMINTGMNIARLNFSH 69
>U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical
protein F33G12.5 protein.
Length = 928
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +3
Query: 477 NDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLA 656
N+ IA+ D L LT + +L A R + ++ + + A+ ++ +ETA
Sbjct: 197 NEAIAQKDSL---LTARHQELEGARREVASMQANLLNVQHERSEAQARVKSMIKETAAQE 253
Query: 657 NRMADIAQDV 686
NR++ + +D+
Sbjct: 254 NRISQLMKDI 263
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVAR---RDAETARQDC 623
A V+ + DV+A ++ +K+ + LAE + +L E +A RDAET
Sbjct: 1437 AEDVQKELTDVVAATREMERKMRKFDQQLAEERNNTLLAQQERDMAHQMLRDAETKALVL 1496
Query: 624 ENARRETAQLANRM 665
N E + +++
Sbjct: 1497 SNELSEKKDIVDQL 1510
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVAR---RDAETARQDC 623
A V+ + DV+A ++ +K+ + LAE + +L E +A RDAET
Sbjct: 1437 AEDVQKELTDVVAATREMERKMRKFDQQLAEERNNTLLAQQERDMAHQMLRDAETKALVL 1496
Query: 624 ENARRETAQLANRM 665
N E + +++
Sbjct: 1497 SNELSEKKDIVDQL 1510
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 453 APAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVAR---RDAETARQDC 623
A V+ + DV+A ++ +K+ + LAE + +L E +A RDAET
Sbjct: 1437 AEDVQKELTDVVAATREMERKMRKFDQQLAEERNNTLLAQQERDMAHQMLRDAETKALVL 1496
Query: 624 ENARRETAQLANRM 665
N E + +++
Sbjct: 1497 SNELSEKKDIVDQL 1510
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,761,202
Number of Sequences: 27780
Number of extensions: 406073
Number of successful extensions: 1165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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