Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j23
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 66 2e-12
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 66 2e-12
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 30 0.19
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.33
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 29 0.33
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.33
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 28 0.57
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 27 1.3
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 1.7
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 2.3
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 2.3
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 3.0
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.0
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 4.0
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 5.3
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 25 5.3
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 5.3
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 5.3
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 22 5.5
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 25 7.0
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 7.0
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 7.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 7.0
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 25 7.0
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 7.0
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar... 24 9.3
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 24 9.3
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.3
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 24 9.3
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 24 9.3
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 24 9.3
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 24 9.3
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 24 9.3
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 66.5 bits (155), Expect = 2e-12
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = +3
Query: 99 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIY 230
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q + Y
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKY 44
Score = 39.5 bits (88), Expect = 2e-04
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 213 QIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 365
Q+E IY +A+ IR DPS +K K+ + ++ +RKLT ERK R K
Sbjct: 235 QLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKERFNAK 287
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 66.5 bits (155), Expect = 2e-12
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = +3
Query: 99 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIY 230
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q + Y
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKY 44
Score = 37.9 bits (84), Expect = 7e-04
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 213 QIEAIYKKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERKNRIKQK 365
Q+E IY +A+ IR DPS +K K+ + + +RKLT ERK R K
Sbjct: 235 QLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKERFNAK 287
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.9 bits (64), Expect = 0.19
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 210 VQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 374
+ IE KK+ + AD KKE K+ K+ + +KRK +E K+KK S
Sbjct: 449 IVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKS 503
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.33
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = +3
Query: 126 KQYFKRYQVKFKRRREGK--TDYYARKRLVV--QIEAIYKKAHEAIRADPSHKKKELKKD 293
K+ K + + ++RRE + + A+K L Q EA K+ + ++ + K++EL++
Sbjct: 601 KKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELER- 659
Query: 294 SVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 398
QKR K+K E+K + +Q++A K + Q
Sbjct: 660 ---QKREEKQKQKEREKKLKKQQQEADREKMAREQ 691
Score = 25.8 bits (54), Expect = 3.0
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +3
Query: 138 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 317
+ +Q+ R E + R+++ Q +A K E + +++ELKK K+K+ +
Sbjct: 542 RMFQIFAARLFEQRVLQAYREKVAQQRQA--KLLEEIEEENKRKQERELKKIREKEKKRD 599
Query: 318 KRK-LTLAERKNRIKQKKASFIKRLQAQ 398
K+K L LA+ + R ++++A + AQ
Sbjct: 600 KKKQLKLAKEEER-QRREAERLAEQAAQ 626
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 29.1 bits (62), Expect = 0.33
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 231 KKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFIKRLQAQA 401
+ A E R + + + K LKK + ++KR K+ K AE K R+++++A + K++ ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEK-RLQKERAKYAKQMSRES 765
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 29.1 bits (62), Expect = 0.33
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 213 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKL-TLAERKNRIKQKKAS 374
+++ ++ E I PS K+K+ KK+ K+K KR +E + K+KK S
Sbjct: 442 EVDIDVEETVETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKKS 496
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 28.3 bits (60), Expect = 0.57
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = -3
Query: 269 VGWIRTDGFMGFLVDGFNLNNEAF--TSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHI 96
VG I F+ FL F AF T + +SF F+T + + + LF H F+ S +
Sbjct: 453 VGIIAVLTFISFLDTSFATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDV 512
Query: 95 L---NLSYKVAS 69
+ N+ Y+V S
Sbjct: 513 VIVNNIKYEVVS 524
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 276 KELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQA 401
KE+KK K KR T A + +Q+K +IK+++ +A
Sbjct: 426 KEMKKKLKKSPPKRKRITTRASYDRQKEQRKKEYIKKVKKEA 467
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 1.7
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 153 KFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVK----QKRWNK 320
+FK R E D LV E I + I + ++++ D+VK + R ++
Sbjct: 66 QFKEREE-HLDTLQTNGLVRLKETIRMDSQSEISSTMGLVGEKMELDAVKGRKVESRVDR 124
Query: 321 RKLTLAERKNRIKQKK 368
RKL AERK R K +K
Sbjct: 125 RKLEKAERKIRAKWEK 140
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 216 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 326
+E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 431 VESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 2.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 219 EAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKRKLTLAERKNRIKQKKASFIKR 386
EAI + EA RA +EL + QKR +R E K R +++ A ++R
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLER 844
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 214 RLKPSTRKPMKPSVRIHP 267
RL PS RKP+ V++HP
Sbjct: 383 RLLPSLRKPLLNFVKVHP 400
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 231 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 386
KK +E + SH+K K KRKL + +++ K+ +++ IK+
Sbjct: 27 KKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNIIKK 78
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 4.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 231 KKAHEAIRADPSHKKKE--LKKDSVKQKRWNKRKLTLAERKNRIKQKKA 371
KK E A S K+ E KKD+ + ++W+K T + + K+K A
Sbjct: 5 KKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAA 53
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 221 FNLNNEAFTSIIISFPFTTPLEFYLVPLEVLFV 123
+NLN ++ SI +SFP +F +VP+ FV
Sbjct: 540 YNLNVKSIESISLSFPKPCS-DFVVVPVHETFV 571
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 5.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 270 KKKELKKDSVKQKRWNKRK 326
KKK+ KK + K+K+ NKRK
Sbjct: 436 KKKKKKKKNNKKKKKNKRK 454
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 5.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 258 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 365
D KK + +K+ ++Q+R KRK L + ++K+K
Sbjct: 89 DNEAKKMKREKEILRQQR-QKRKSELTQLSQKVKEK 123
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 5.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 267 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKAS 374
HKKK+ + S K+K + K ++K ++K K S
Sbjct: 203 HKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDKPES 238
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 22.2 bits (45), Expect(2) = 5.5
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 225 IYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNR 353
I+K+ E +R ++E+KK + K++ T +E K +
Sbjct: 114 IFKRRSEVVRGADEPTEEEIKKGEAADEN-EKKEPTSSESKKQ 155
Score = 21.0 bits (42), Expect(2) = 5.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 126 KQYFKRYQVKFKRRRE 173
K Y K+Y FKRR E
Sbjct: 105 KAYAKKYAPIFKRRSE 120
>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 268
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 255 ADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 350
+DP + KK SV +K W +R+ TL +++
Sbjct: 76 SDPLPAEFYFKKGSVGEKDWQERQKTLKGKES 107
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +3
Query: 219 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 350
E I + + H++K+ ++ V++K KRK +R+N
Sbjct: 510 ETITRSGIAISSTEMDHQQKQARRRRVRRKHAEKRKQMAEKRRN 553
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 7.0
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 276 KELKKDSVKQKRWNKRKLTLAER--KNRIKQKKASFIKRLQAQAEA 407
+E + DS + ++ + + AE+ KNR +KKAS ++ LQ EA
Sbjct: 553 REDENDSEQLDHFDMKSILKAEKFKKNRKLKKKASNLEGLQEGFEA 598
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 24.6 bits (51), Expect = 7.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 231 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQ 362
KK H A + P +KK+LKK S N + +A +Q
Sbjct: 4 KKGHYAKHSGPKAEKKKLKKVSDGSASNNPKAFAVASAGRMARQ 47
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 138 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKK 236
K + K KR++E K + K V++ A+YKK
Sbjct: 86 KGNKTKKKRKKEKKKETIVEKNKVLKSFALYKK 118
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 7.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 240 HEAIRADPSHKKKELKKDSVKQKRWNKRK 326
HE RA +KKE + ++V++KR NK++
Sbjct: 332 HEQSRALKEKRKKE-QDENVRRKRENKKR 359
>SPAC8C9.10c |||ribosome biogenesis protein
Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 24.2 bits (50), Expect = 9.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 309 RWNKRKLTLAERKNRIKQK 365
+W ++K TL E+K R K K
Sbjct: 35 QWKQKKSTLEEKKERRKMK 53
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 278 RVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSGGSLNAL 418
++++R ++ L++ A++ + + ++K LH GG+L +L
Sbjct: 450 QIEKRANESNNLQREIADLSEQIVELESKRNDLHSALLEMGGNLTSL 496
>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 167
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 252 RADPSHKKKELKKDSVKQKRWNKRK 326
R +KKE KK+ K+K+ +RK
Sbjct: 139 RLKEQREKKEQKKEQKKEKKTERRK 163
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 269 QEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQE 385
+EER K+ L + E E+ + + E+K + ++ L QE
Sbjct: 133 EEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQE 171
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 258 DPSHKKKELKKDSVKQKRWNKRKLTLAER 344
DPS K K K + ++W + LT A R
Sbjct: 18 DPSKKYKPFKGIQLPNRQWPNKVLTKAPR 46
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 301 LTESFFNSFFLWDGSARMASWA 236
LT+S+ + FL+ GSA+M WA
Sbjct: 248 LTKSWASWIFLFVGSAQMFVWA 269
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 24.2 bits (50), Expect = 9.3
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 219 EAIYK--KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTL 335
E IY+ + HE P +KK+ K+ S K+K+ + T+
Sbjct: 48 EVIYELPEVHEKKDKKPEKRKKDQKEASEKKKKGKRTSPTI 88
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +3
Query: 276 KELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 386
++L K S+++K K+K + A ++ + +KKA +++
Sbjct: 166 EQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQ 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,498
Number of Sequences: 5004
Number of extensions: 33968
Number of successful extensions: 182
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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