Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j23
(448 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 66 9e-12
SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 34 0.047
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 33 0.14
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082) 33 0.14
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 31 0.33
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 31 0.33
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37) 30 0.76
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.76
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 30 1.0
SB_2860| Best HMM Match : IncA (HMM E-Value=0.41) 30 1.0
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06) 29 1.3
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 29 1.3
SB_28851| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09) 29 1.8
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) 29 2.3
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 29 2.3
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_53951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29) 28 3.1
SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 3.1
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 28 3.1
SB_1761| Best HMM Match : ERF (HMM E-Value=6.8) 28 3.1
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1) 28 3.1
SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9) 28 3.1
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 3.1
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30) 28 4.0
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 4.0
SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1) 27 5.3
SB_50343| Best HMM Match : MAP (HMM E-Value=3.4) 27 5.3
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05) 27 7.1
SB_35415| Best HMM Match : BRF1 (HMM E-Value=4.4) 27 7.1
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_13895| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_56872| Best HMM Match : RVT_1 (HMM E-Value=2.7e-30) 27 9.3
SB_53654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_46263| Best HMM Match : RVT_1 (HMM E-Value=2.2e-30) 27 9.3
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) 27 9.3
SB_34436| Best HMM Match : SAM_1 (HMM E-Value=5.1) 27 9.3
SB_32921| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 9.3
SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_17803| Best HMM Match : SRCR (HMM E-Value=0) 27 9.3
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_16177| Best HMM Match : SAM_1 (HMM E-Value=5.1) 27 9.3
SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 27 9.3
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07) 27 9.3
SB_1096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_1034| Best HMM Match : RVT_1 (HMM E-Value=2.2e-30) 27 9.3
SB_913| Best HMM Match : E-MAP-115 (HMM E-Value=1.7) 27 9.3
SB_59736| Best HMM Match : RVT_1 (HMM E-Value=8.2e-31) 27 9.3
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 27 9.3
SB_43536| Best HMM Match : DUF1410 (HMM E-Value=3.5) 27 9.3
SB_43054| Best HMM Match : SAM_1 (HMM E-Value=5.2) 27 9.3
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2) 27 9.3
SB_40130| Best HMM Match : SAM_1 (HMM E-Value=5.1) 27 9.3
SB_18267| Best HMM Match : SAM_1 (HMM E-Value=5.1) 27 9.3
SB_9039| Best HMM Match : M (HMM E-Value=0.00046) 27 9.3
SB_867| Best HMM Match : Leo1 (HMM E-Value=0) 27 9.3
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 66.5 bits (155), Expect = 9e-12
Identities = 32/56 (57%), Positives = 46/56 (82%)
Frame = +3
Query: 216 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
IE IYK AH+AIRADP HKK E KKD V+ KR++++K++ +R +R+KQKKA+F++
Sbjct: 268 IEGIYKAAHQAIRADPVHKKAE-KKD-VQLKRFHRKKMSRQQRVDRVKQKKAAFLR 321
Score = 35.5 bits (78), Expect = 0.020
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 162 RRREGKTDYYARKRLVVQ 215
RR +GKTDYYARKRL+ Q
Sbjct: 17 RRSQGKTDYYARKRLITQ 34
>SB_50227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 35.5 bits (78), Expect = 0.020
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = +3
Query: 192 ARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKA 371
A++ +V +A + ++A P+ KKK+ KK K+K+ K+K ++K + K+KK
Sbjct: 125 AKEEMVAATKAA-EALYQAFPQPPTKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 183
Query: 372 SFIKRLQAQAE 404
K+ + + E
Sbjct: 184 KKKKKKKEEEE 194
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 219 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 398
EA+Y+ A KKK+ KK K+K+ K+K ++K + K+KK K + +
Sbjct: 137 EALYQ-AFPQPPTKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEEEEE 195
Query: 399 AE 404
E
Sbjct: 196 EE 197
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 34.3 bits (75), Expect = 0.047
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +3
Query: 108 VKVVKNKQYF-KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKEL 284
+K +K+K+ K + K KR RE K RKR Q+E K+ + + + ++KE
Sbjct: 898 LKEMKDKEKIEKEKREKDKREREEKE----RKRRQQQLEKEKKEKEKKLLIEKEKREKEK 953
Query: 285 KKDSVKQKRWNKRKLTLAERKNRIKQK 365
+K+ +++K K K AER + K++
Sbjct: 954 QKERLREKE-EKEKQKEAERAKKEKER 979
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 32.7 bits (71), Expect = 0.14
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 147 QVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKR 323
Q K + + +R+RLV+QIE + E + K +ELK++ K KR N
Sbjct: 896 QAKLSYKEGSEISKMSRERLVLQIEQDFLGKLEKAKVPLEDKIRELKEELSKAKREQNTA 955
Query: 324 KLTLAERKNRIKQK 365
K L + K ++Q+
Sbjct: 956 KSALEQEKADLQQE 969
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +2
Query: 257 GSIPQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSGGSLNALNIIFEA 436
G+I + VK+ LG+ E + T A + + +Q + + +++ G +++ALN +F
Sbjct: 1931 GAIRALQEVKKHLGKLEPVSSTLAELRTQAQQFKVYQNEINKH----GTTVDALNEMFHG 1986
Query: 437 LKKK 448
LKKK
Sbjct: 1987 LKKK 1990
>SB_39125| Best HMM Match : DUF164 (HMM E-Value=0.082)
Length = 363
Score = 32.7 bits (71), Expect = 0.14
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 147 QVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKR-WNKR 323
Q K + + +R+RLV+QIE + E + K +ELK++ K KR N
Sbjct: 176 QAKLSYKEGSEISKMSRERLVLQIEQDFLGKLEKAKVPLEDKIRELKEELSKAKREQNTA 235
Query: 324 KLTLAERKNRIKQK 365
K L + K ++Q+
Sbjct: 236 KSALEQEKADLQQE 249
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 32.3 bits (70), Expect = 0.19
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 159 KRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLA 338
KR+RE + RKR + K+ E+++ HK+K+ K+ S K KR +KRK
Sbjct: 198 KRKRELAKHKHKRKRKRESAKHRLKRKRESVK----HKRKQ-KRKSAKHKRKHKRKSDKH 252
Query: 339 ERKNRI 356
+RK +
Sbjct: 253 KRKQTL 258
Score = 30.7 bits (66), Expect = 0.57
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 222 AIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 368
A +K + R H+ K K++SVK KR KRK +RK++ K K
Sbjct: 204 AKHKHKRKRKRESAKHRLKR-KRESVKHKRKQKRKSAKHKRKHKRKSDK 251
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 117 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 212
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +3
Query: 162 RRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAE 341
R + K Y + R+++Q+ + H +P H + L VKQ R+ R++
Sbjct: 46 RTLDAKLGYTFKDRMLLQLALSHPSYHLNYGMNPDHARNSLSNCGVKQPRYGDRRIHNVH 105
Query: 342 RKNR 353
K +
Sbjct: 106 SKKK 109
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 31.5 bits (68), Expect = 0.33
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 111 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAI----RADPSHKKK 278
K K KQ + K K R E K ++RL Q E KK E + R + +K
Sbjct: 325 KEEKEKQRLEAKAAKEKERLEAKQKK-EQERLEKQAEK-EKKEKERLEKKQREEKDRLEK 382
Query: 279 ELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 407
+ KK+ K+K+ + + E+K R ++KK ++++ + +A
Sbjct: 383 KEKKEEEKRKKEEEINAKIEEKKKREEKKKQEEEEKMKKKEQA 425
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 30.7 bits (66), Expect = 0.57
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 252 RADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 386
R + KKK+ KK K+K+ K+K +KN+ K KK +K+
Sbjct: 14 REEKKRKKKKQKKKKKKKKK-KKKKKNKKNKKNKNKNKKKKKMKK 57
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 228 YKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 368
Y++ + + KKK+ KK K+ + NK+ ++K ++K+KK
Sbjct: 13 YREEKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKKK 59
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 249 IRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAE 404
+R + +KK KK K+K+ K+K +KN+ + K K+++ + E
Sbjct: 9 MRREYREEKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKKKE 60
>SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)
Length = 341
Score = 30.3 bits (65), Expect = 0.76
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = +3
Query: 126 KQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQ 305
+Q K+ +++ KRR+E K ++ +++L E K+ E I K KE+ K
Sbjct: 132 EQREKQMRIREKRRKE-KEEFEKQRKLK---EDKQKEIEEKINEWIDKKNKEILKSKTSS 187
Query: 306 KRWNKRKLTLAERKNRIKQKKA 371
++ ++K E +NR ++K+
Sbjct: 188 QKLQEQKQAEKEEQNRTIEEKS 209
>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.3 bits (65), Expect = 0.76
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +3
Query: 105 FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKEL 284
F+KV+ N+Q R + KR + K R+ + + Y + E + + + K KEL
Sbjct: 56 FLKVM-NQQERSRKSAEAKRESKKKIKETERELVQKGKKPFYLRKSELKKLELAEKYKEL 114
Query: 285 KKDSVKQKRWNKRKLTLAERKNR 353
K QK KR+ A + R
Sbjct: 115 KSKGKLQKYLTKRRKKTASKDRR 137
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.9 bits (64), Expect = 1.0
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +3
Query: 117 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAI--RADPSHKKKELKK 290
++ KQ R Q + ++R + + +R +IEA+ K+A I R + K +E +K
Sbjct: 1180 IRQKQAAWRQQEEEEQRVKERLQILREER--ERIEALNKEADLLIQRRKEAERKAEEKRK 1237
Query: 291 DSVKQKRWNK---RKLT-LAERKNRIKQKK 368
+QKR ++ R+L +AE KNR +Q K
Sbjct: 1238 QIERQKRIDEEVERRLQKIAEEKNREEQLK 1267
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 213 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQ 392
Q+EA K+ HE + +PS + D ++++ K K L + + ++K +A IK L+
Sbjct: 889 QLEAAEKRVHELLSKEPS---SDQDIDKMRKETEEKFKTDLQDTELKLKDAEAK-IKDLE 944
Query: 393 AQAE 404
Q E
Sbjct: 945 TQLE 948
>SB_2860| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 417
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 144 YQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVK-QKRWNK 320
+QV+ +R + + ++RLV Q+ A K+ + +HK++EL K VK Q +
Sbjct: 182 HQVEMERSKVRDLEQQ-KQRLVEQLYAAEKRYQDKENEFMTHKERELSKPEVKLQSELDF 240
Query: 321 RKLTLAERKNRIKQKKASFIKRLQAQAEA 407
++ AE + +++ S I Q A
Sbjct: 241 LRVEKAELERKLESSNKSKIHYKQQWGRA 269
>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
Length = 1231
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +3
Query: 117 VKNKQYFKRYQV-KFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKD 293
+K++ ++ V K K T + ++++ +YKK IR + KKE ++
Sbjct: 1098 IKSEVLIRKLDVYKRKLGAYSPTRRLQKSEVLIRELDVYKKGEVLIRELDGYNKKERARE 1157
Query: 294 SVKQKRWN-KRKLTLAERKNRIKQKKASFIKRLQAQAEA 407
++QK+ +R+ AE + ++K+ ++L+ + +A
Sbjct: 1158 KMRQKQLRLQREREEAEHQEAERKKEEEAKQKLKQKEDA 1196
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/83 (21%), Positives = 39/83 (46%)
Frame = +3
Query: 114 VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKD 293
+++ +K+ +V + AR+++ + + ++ EA + KK+E K
Sbjct: 1129 LIRELDVYKKGEVLIRELDGYNKKERAREKMRQKQLRLQREREEAEHQEAERKKEEEAKQ 1188
Query: 294 SVKQKRWNKRKLTLAERKNRIKQ 362
+KQK ++KL ER+ +Q
Sbjct: 1189 KLKQKEDARKKLEEVERRKSQQQ 1211
>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1151
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 150 VKFKRRREGKTDYYARKRLVVQIEAIY--KKAHEAIRADPSHKKKELKKDSVKQKRWNKR 323
++ KRR G D++ QI A+Y K +E + +K++++ K K W ++
Sbjct: 630 LEMKRRLVGSDDHWEMPTYYNQIAAVYERKATNEEKKNFFRRSRKKIEEYFTKAKEWYEK 689
Query: 324 KLTLAE 341
+ L E
Sbjct: 690 AIALQE 695
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = +3
Query: 138 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 317
+ Q K K + E K DY+AR + +I + K+ E + AD + + ++ K +
Sbjct: 629 RELQTKLKTQ-EKKVDYFARAMRMEEIPLLNKQYEEHLVADREFWENQEEERVRKAIEEH 687
Query: 318 KRKLTLAERKNRIKQKKASFIKRLQ 392
++ + + R R+ K +FI L+
Sbjct: 688 EKLVETSARLQRMIPDKDAFINTLR 712
>SB_28851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 DPSHKKKELKKDSVKQKRWNKRK-LTLAERKNRIKQKKA 371
+ S KKELK D+ K+ NKRK + +E K KKA
Sbjct: 129 ETSESKKELKSDTKSVKKANKRKTMNESESTKTKKPKKA 167
>SB_11458| Best HMM Match : GTP_CDC (HMM E-Value=2.6e-09)
Length = 337
Score = 29.1 bits (62), Expect = 1.8
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = +3
Query: 138 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 317
K Y +F+ + E + +K V E KKA + + A H LKK ++K+
Sbjct: 240 KEYMSQFQDKEEKMRQRFVQK--VKDKENELKKAEQELHAKFDH----LKKVQAEEKKKL 293
Query: 318 KRKLTLAERKNRIKQKKASFIKRLQAQAE 404
+ K + E + + +K+ + QAQA+
Sbjct: 294 EEKRKMLEEEMSLFEKQKAAANTAQAQAQ 322
>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
Length = 461
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 234 KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
+AH+ A P +KKK KK+ +QK K K+ + K++ K K +K
Sbjct: 293 RAHKLTPAKPVNKKKNDKKEQTQQKE-KKNKIN-NDVKSKSKSKIVKILK 340
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 255 ADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKA 371
A+ H+ +E+KK ++R KR+ LAE+K R +QK A
Sbjct: 595 AEAKHQNEEIKKKKEAEER--KRR-ALAEQKERDRQKSA 630
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 169 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKERN 38
RRL+ Y +Y F TL PI+ + +T+ + T TK K R+
Sbjct: 1200 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSRS 1242
>SB_53951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 270 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 368
KKK+ KK K+K+ NK+K+ E K ++++
Sbjct: 115 KKKKKKKKKKKKKKINKKKINKVEEKEEGEEEE 147
>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
Length = 462
Score = 28.3 bits (60), Expect = 3.1
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Frame = +3
Query: 120 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYK---KAHEAIRADPSHKKKELKK 290
KN+ + KR ++K RRR+ + K Q A K + H+ + KK KK
Sbjct: 352 KNRNHQKRARIKNTRRRQEQKTPEEGKNRKHQKRARTKNTRRRHQQKPPEEGKNKKHQKK 411
Query: 291 DSVKQKR---------WNKRKLTLAERKNRIKQKKA 371
+ K R K K T E KN+ QKKA
Sbjct: 412 ATTKNTRRGQEQKPPEEGKNKKTPEEGKNKKHQKKA 447
Score = 27.9 bits (59), Expect = 4.0
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +3
Query: 120 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSV 299
KN+ + K+ + + RRR+G+ K +K E + +K KK
Sbjct: 119 KNRNHQKKARTENTRRRQGEKPPEEGKNRNT------RKRQEQKTPEEGKNRKHQKKART 172
Query: 300 KQKRWNKRKLTLAERKNRIKQKKA 371
K R + + T E KN+ QK+A
Sbjct: 173 KTTRSRQEQKTPEEGKNKNHQKRA 196
Score = 27.5 bits (58), Expect = 5.3
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +3
Query: 120 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRAD---PSHKK--KEL 284
KNK + K+ Q K EGK + ++ + E KK + R + P K K
Sbjct: 249 KNKNHQKQEQ---KTPEEGKNKNHQKRARIETPEEGKKKKNTRRRLEQKTPEEGKNRKPQ 305
Query: 285 KKDSVKQKRWNKRKLTLAERKNRIKQKKA 371
KK K R + + T E KN+ QK+A
Sbjct: 306 KKARTKNTRKRQEQKTPKEGKNKNHQKRA 334
>SB_44297| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 824
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 169 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKERN 38
RRL+ Y +Y F TL PI+ + +T+ + T TK K R+
Sbjct: 663 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSRS 705
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 185 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 78
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 169 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKERN 38
RRL+ Y +Y F TL PI+ + +T+ + T TK K R+
Sbjct: 263 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSRS 305
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 169 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKERN 38
RRL+ Y +Y F TL PI+ + +T+ + T TK K R+
Sbjct: 356 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSRS 398
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 267 HKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 368
HK K+ K++ K++R + K +ERK ++KK
Sbjct: 191 HKDKKKKREESKERRRHSDKAEKSERKREKEEKK 224
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 285 KKDSVKQKRWNKRKLTLAERKNRIKQK 365
+KD + RW+KR +L + K R+K+K
Sbjct: 709 EKDLSLRSRWSKRVHSLIDEKTRVKEK 735
>SB_1761| Best HMM Match : ERF (HMM E-Value=6.8)
Length = 299
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 169 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKERN 38
RRL+ Y +Y F TL PI+ + +T+ + T TK K R+
Sbjct: 97 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKNRS 139
>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
Length = 599
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQ 392
E R +KKE KK+ K+++ ++K ERK K+++ K+ +
Sbjct: 35 EQEREKKERRKKERKKERKKERKKERKKEKKKERKKERKEERKKERKKAE 84
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 270 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAEA 407
+KKE KK+ K+++ K+K ERK K+++ K+ E+
Sbjct: 48 RKKERKKERKKERKKEKKKERKKERKEERKKERKKAEKKFTDSNES 93
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 159 KRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLA 338
K R+ GK D ++R E ++ E + +KKE KK+ K+++ +++
Sbjct: 24 KTRKGGKRDEREQER-----EKKERRKKERKKERKKERKKERKKEKKKERKKERKEERKK 78
Query: 339 ERKNRIKQ 362
ERK K+
Sbjct: 79 ERKKAEKK 86
>SB_42440| Best HMM Match : RnaseH (HMM E-Value=0.9)
Length = 348
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 169 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKERN 38
RRL+ Y +Y F TL PI+ + +T+ + T TK K R+
Sbjct: 110 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSRS 152
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +3
Query: 138 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 317
+RY++ +K+R G Y RKRL + +++K + +R ++ L K ++ R+
Sbjct: 736 RRYRLLYKKRPSGLQVRYGRKRLPI----VWRKRNYFVRIGGQSRQIFLSKKQIR-LRYQ 790
Query: 318 KRKLTLAERKNRI 356
R L L + R+
Sbjct: 791 GRLLKLPLTRLRV 803
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 269 QEERVKERLGQTEALEQTQANI---GREEKQNQAKE 367
QEE + E+ GQ + LEQT+ + G +KQ +KE
Sbjct: 2250 QEEELDEQAGQIQILEQTKLRLEMAGERDKQLISKE 2285
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 169 RRLLNFTWYLLKYCLFFTTLTNPIF*I*VTKWRPQTDTKQKERN 38
RRL+ Y +Y F TL PI+ + +T+ + T TK K R+
Sbjct: 755 RRLMGLLSYFRRYVHNFATLAAPIYDL-LTEPKGGTSTKSKSRS 797
>SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +3
Query: 141 RYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNK 320
R Q + K EG+ + RKRL + E +K + PS+++ +D+ K++ +
Sbjct: 905 RLQDQNKENEEGEVSSWRRKRLEREREREKEKEKAEV---PSYRRNRF-QDAEKER--EQ 958
Query: 321 RKLTLAERKNRIKQKK 368
RK+ +ER + KQ++
Sbjct: 959 RKVRESERLEKEKQER 974
>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
Length = 1084
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 180 TDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKR 323
+DY + + + ++ KK H +R PS K D + +K W R
Sbjct: 605 SDYSLQLKADLTLDEAVKKQHNVVRGSPSISNKN-SVDKIGKKIWKHR 651
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Frame = -1
Query: 364 FCLILFFLSAN--------VSLRLFQRFCLTESFFNS 278
FCL +FF+S + S+RLF+ FC+T S F S
Sbjct: 242 FCLSIFFISKDKKEEVLHFFSIRLFKVFCVTLSGFTS 278
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 102 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 188
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
>SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 249 WLHGLSCRWLQSEQRGVYEHN-NQFS 175
++HGLSC + E+ ++EHN N FS
Sbjct: 16 YVHGLSCDAFRPEKYHLFEHNCNTFS 41
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.5 bits (58), Expect = 5.3
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +3
Query: 147 QVKFKRRREGKT-DYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKR 323
Q K + + +G+ D + Q E +K E + + KK+ELK+ ++K K
Sbjct: 259 QEKVEEKEKGEVEDAQTTEEEEKQKEEAERKKQEKLEK-LAKKKEELKERKRQEKLEQKA 317
Query: 324 KLTLAERKNRIKQKKASFIKRLQAQAE 404
K ER+ R K+K+ +R+Q + E
Sbjct: 318 KKKEKERQEREKEKERE-KERIQQEKE 343
>SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1)
Length = 332
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 273 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAE 404
K + K+D+VK+++ + RKL K R +Q+K I++ +A E
Sbjct: 106 KPDCKQDAVKEQKPSGRKLKRKLYKQRKRQEKFKKIEKKKAIRE 149
>SB_50343| Best HMM Match : MAP (HMM E-Value=3.4)
Length = 243
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 264 SHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 386
S K+++KK S+K++ KR + K R KK S KR
Sbjct: 202 STNKRDIKKTSIKKRSMKKRSIKKRSMKKR-SIKKRSIKKR 241
>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
Length = 867
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAE 341
EAI+ H+K+ELKK K+K K++ T+ E
Sbjct: 549 EAIKE--KHQKQELKKQRFKEKMEKKQEETMVE 579
>SB_35415| Best HMM Match : BRF1 (HMM E-Value=4.4)
Length = 408
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 225 IYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTL 335
+ K+ EA + K+ ++D ++K+WNKR+ L
Sbjct: 45 LMKQKTEAAKKQRISNKQARQEDQEERKKWNKRQAVL 81
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 27.1 bits (57), Expect = 7.1
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = +3
Query: 177 KTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRI 356
K D KRL+ + + KK +++R KE +K + Q R NK L++R NR+
Sbjct: 926 KRDLKLEKRLLREQKKDLKKLKKSLR-------KERRKFAKTQARKNKVVEKLSKRLNRV 978
Query: 357 KQKKASFIKRLQAQA 401
K K F K+ + A
Sbjct: 979 KIKN-KFRKKTKQSA 992
>SB_13895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/76 (18%), Positives = 39/76 (51%)
Frame = +3
Query: 120 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSV 299
+ ++Y R + +RR + Y +R+R + + I ++ + + R S ++ ++ +
Sbjct: 42 QRRRYISRRRYISRRRYISRRRYISRRRYISRRRYISRRRYISRRRYISRRRYISRRRYI 101
Query: 300 KQKRWNKRKLTLAERK 347
++R+ R+ +A R+
Sbjct: 102 SRRRYISRRRFIARRR 117
>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 231 KKAHEAIRADPSHKKKELKKDSVKQK 308
KKA EA D +KKE KK K+K
Sbjct: 521 KKAKEATEEDDGEEKKEKKKKKKKKK 546
>SB_56872| Best HMM Match : RVT_1 (HMM E-Value=2.7e-30)
Length = 575
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 486 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 532
>SB_53654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 92 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 138
>SB_51640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 663 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 709
>SB_46263| Best HMM Match : RVT_1 (HMM E-Value=2.2e-30)
Length = 490
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 292 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 338
>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
Length = 1136
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 180 TDYYARKRLVVQIEAIYKKAHEAIR-ADPSHKKKELKKDSVKQKR---WNKRKLTLAERK 347
++Y V +E + EA+R + +H++ K S ++R W K+K + E
Sbjct: 397 SEYSRTTERVDHLEDVLANKEEALRNSQDAHEQTVAKLSSAIKERETSWKKQKAEIEEHY 456
Query: 348 NRIKQKKASFIKRLQAQAE 404
N+I + K+ Q A+
Sbjct: 457 NKIINDLQNRTKKTQNLAD 475
>SB_34436| Best HMM Match : SAM_1 (HMM E-Value=5.1)
Length = 119
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 30 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 76
>SB_32921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 30 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSLQVK 76
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 168 REGKTDYYARKRLVVQIEAIYKKAHEAIRA--DPSHKKKELKKDSVKQKRWNKRKLTLAE 341
RE ++ YA + V +K A+ A DP+ + K ++ +K KRKL +
Sbjct: 1086 REAMSEVYASLQHGVMETKEKRKRQRALEAVADPAESARRKFKRNLSKKETRKRKLDALK 1145
Query: 342 RKNRIKQKKASFIK 383
++K+ ++ K
Sbjct: 1146 PDRKMKRARSKVEK 1159
>SB_19150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 338 REEKQNQAKEGFLHQETAGSGG--SLNALNIIFE 433
R +N +K F HQE G+G S AL ++FE
Sbjct: 378 RPGNENLSKAYFWHQEAPGNGSIESQGALGVMFE 411
>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1428
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 160 RGVVKGKLIIMLVNASLFRLKPSTRKPMKPSVRIHP 267
R V G + + LV LFRL +R P + RI+P
Sbjct: 1381 RLVTLGLVTLGLVTLGLFRLDHESRHPQNRNFRINP 1416
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 213 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERK 347
++E IY E + S K ++L+KD K+ + K +L LAE K
Sbjct: 1883 ELETIYNSKIEDLNLAKS-KIEKLEKDHEKESEFLKVQLLLAEEK 1926
>SB_16177| Best HMM Match : SAM_1 (HMM E-Value=5.1)
Length = 181
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 92 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 138
>SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 261 DPHGWLHGLSCRWLQSEQRG 202
+ HGWL + WL SE RG
Sbjct: 644 ETHGWLPSETLGWLPSETRG 663
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 261 DPHGWLHGLSCRWLQSEQRG 202
+ HGWL + WL SE RG
Sbjct: 684 ETHGWLPSETHEWLPSETRG 703
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 26.6 bits (56), Expect = 9.3
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = +3
Query: 123 NKQYFKRYQVKFKRRREGKTDYY-ARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSV 299
NKQ +R++ ++KRR +G D A R + E E D + E +K+ V
Sbjct: 1349 NKQEIERWKNEYKRRIDGLEDQLEAETRKMKHAEEALLLEREKSIQDKKNGLAEFEKEKV 1408
Query: 300 K-QKRWNKRKLTLAERKNRI---KQKKASFIK 383
+R+N R + ++ + QKK S ++
Sbjct: 1409 AIYQRFNDRIAAVESERDILVSDYQKKISSLR 1440
>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
Length = 721
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 167 TPLEFYLVPLEVLFVLHNFNESHILNLSYKVASTDGHQAKRKELLL 30
T +EF ++ E F L N IL L+Y+ +TDG +L+L
Sbjct: 334 TLVEFAVIRNEKDFFLRNSINEGILGLAYRSLATDGVTPLYDQLVL 379
>SB_1096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 266 PQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQE 385
PQE+ +K +L + L + G EE+ N+ + H++
Sbjct: 50 PQEKSMKNQLNEIRYLRWLLMSKGTEERLNEVRSDIRHEK 89
>SB_1034| Best HMM Match : RVT_1 (HMM E-Value=2.2e-30)
Length = 558
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 292 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 338
>SB_913| Best HMM Match : E-MAP-115 (HMM E-Value=1.7)
Length = 856
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 120 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKD-S 296
+NK++ ++ +FK+ + + ++R+ EA KK ++ AD K + LK+
Sbjct: 24 RNKRWREKKGAEFKKAESQRIEKRRKRRVTEMSEADLKK-YKMAAADRKRKSRMLKRQKE 82
Query: 297 VKQKR 311
V++ R
Sbjct: 83 VEESR 87
>SB_59736| Best HMM Match : RVT_1 (HMM E-Value=8.2e-31)
Length = 326
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 237 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 283
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 26.6 bits (56), Expect = 9.3
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +3
Query: 111 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKK 290
K +K ++ + + + K E + ++ Q EA + + + + K+ KK
Sbjct: 442 KRIKEEEARLKEERRSKDEEENRRKADEERKRKEQEEAERNRVVQEEKRKIEQEGKQRKK 501
Query: 291 DSVKQKRWNKRKLTL---AERKNRIKQKKAS 374
+S KQ+ NK++ L AE N KQK S
Sbjct: 502 ESRKQEEQNKKEQILNKMAEPTNIRKQKSTS 532
>SB_43536| Best HMM Match : DUF1410 (HMM E-Value=3.5)
Length = 344
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 103 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 149
>SB_43054| Best HMM Match : SAM_1 (HMM E-Value=5.2)
Length = 119
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 30 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRKKDNLSIQVK 76
>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
Length = 374
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 263 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 367
I QEE +ER + + + + + REE++ +AKE
Sbjct: 191 IAQEEMRREREEEENRILEEEERVKREEEEKKAKE 225
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 263 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 367
+ +EERVK + +A E + +G +E+Q + KE
Sbjct: 208 LEEEERVKREEEEKKAKEVEEKRMGEDEEQIKLKE 242
>SB_40130| Best HMM Match : SAM_1 (HMM E-Value=5.1)
Length = 181
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 92 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 138
>SB_18267| Best HMM Match : SAM_1 (HMM E-Value=5.1)
Length = 106
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 243 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 383
E I + HK + KD+ + ++K L L RKNR K + +K
Sbjct: 19 EQILNEEGHKISQWYKDNFLKGNYDKYSLMLLGRKNRNKDNLSIQVK 65
>SB_9039| Best HMM Match : M (HMM E-Value=0.00046)
Length = 716
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Frame = +3
Query: 231 KKAHEAIRA----DPSHKKKELKKD--SVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQ 392
++ HE + A D + K+K L+ D SV+ + N+R+ +R+ K+++A +KR+Q
Sbjct: 472 QEEHEEVMAELAQDCADKRKMLQDDIASVESRLSNERQQVEQQRQQLEKEQEA--LKRVQ 529
Query: 393 AQAE 404
A+ E
Sbjct: 530 AELE 533
>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
Length = 591
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 263 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKE 367
+ +E ++ + E+ E+TQA + REE + + +E
Sbjct: 276 LSSDEEKEDNAREVESKEETQARVPREEGEEEEEE 310
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,487
Number of Sequences: 59808
Number of extensions: 240241
Number of successful extensions: 1336
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -