Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j23
         (448 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    81   2e-17
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    27   0.23 
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    25   1.6  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   4.9  
CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    23   6.5  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    22   8.6  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 80.6 bits (190), Expect = 2e-17
 Identities = 35/39 (89%), Positives = 38/39 (97%)
 Frame = +3

Query: 99  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQ 215
           MGFVKVVKNKQYFKRYQV+F+RRREGKTDYYARKRL+ Q
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQ 39



 Score = 30.7 bits (66), Expect = 0.025
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 216 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNR 353
           IE IYK AH +IR  P  ++   ++      RW   +   A R++R
Sbjct: 236 IENIYKNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSR 281



 Score = 27.5 bits (58), Expect = 0.23
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +1

Query: 199 NASLFRLKPSTRKPMKPSVRIHPXXXXXXXXXXXXXXAGTNAS*HWPRGKTESSKRRLPS 378
           +AS+ ++ PS R P + S R                   T  +  WPR +  S  +RLP 
Sbjct: 244 HASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRPT-SWPRSRPTSKPKRLPR 302

Query: 379 SR 384
            R
Sbjct: 303 RR 304


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 0.23
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 219 EAIYKKAHEAIRADPSHKKKE 281
           +++Y+K  + +R DP+HK  E
Sbjct: 238 DSVYRKVRDTVRDDPAHKNLE 258


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 219 EAIYKKAHEAIRADPSHK 272
           E +Y+   +AI+ DP+HK
Sbjct: 212 ETVYQMVKDAIKFDPAHK 229


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 228 YKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASF--IKRLQAQA 401
           + K    +RA    +KK L++ + ++KR  + +    + K  I++ +A    + R + + 
Sbjct: 385 FAKVQANMRATNERRKKTLEQIAAEEKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEV 444

Query: 402 EA 407
           EA
Sbjct: 445 EA 446


>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 305 EALEQTQANIGREEKQNQAKEGF-LHQETAGSGGSLNAL 418
           +ALE+  AN+  E  Q +AKEG    ++  G GGS + +
Sbjct: 268 QALEREAANVTVELLQ-EAKEGADKFRQGIGRGGSFSGI 305


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 189 YARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDS 296
           Y + RL  +++   K  H+  R      + ELKKD+
Sbjct: 146 YEKIRLNPRLQEENKGVHQGYRTTRDFLRLELKKDT 181


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 439,507
Number of Sequences: 2352
Number of extensions: 7430
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 37843779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)