Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j23
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.87 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   4.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 338 REEKQNQAKEGFLHQETAGS 397
           RE+ ++  KEG+LH   +G+
Sbjct: 690 REQTESDDKEGYLHSVVSGA 709


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 297 VKQKRWNKRKLTLAERKNRIKQKK 368
           + +  W+KR+ T  +RK   K++K
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRK 26


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 198 KRLVVQIEAIYKKAHEAIRADP 263
           K + V  +A  KK H AIR +P
Sbjct: 618 KTVQVIEDAAQKKKHRAIRPEP 639


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 111 KVVKNKQYFKRYQVKFKRRREGKTD 185
           K  KN+  +++Y+   K R   KT+
Sbjct: 286 KSYKNENSYRKYRETSKERSRDKTE 310


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 269 QEERVKERLGQTEALEQTQANIGR 340
           Q++ V + L Q    +  QANIGR
Sbjct: 249 QQQIVGKYLQQQAGQQDQQANIGR 272


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 38  IPFFLLGVRLWTPLCN 85
           IP FL  + LW   CN
Sbjct: 404 IPAFLSSLFLWLGYCN 419


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 316 TNAS*HWPRGK 348
           T  S +WPRGK
Sbjct: 138 TGGSCYWPRGK 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,576
Number of Sequences: 438
Number of extensions: 2499
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)