Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10j23
(448 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 59 2e-09
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 58 3e-09
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ... 32 0.15
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 32 0.20
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 32 0.20
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t... 32 0.20
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi... 31 0.47
At4g40020.1 68417.m05666 hypothetical protein 30 0.62
At4g33690.1 68417.m04785 expressed protein 30 0.62
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 30 0.82
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 29 1.1
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 29 1.1
At5g43400.1 68418.m05305 expressed protein strong similarity to ... 29 1.4
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 29 1.4
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 29 1.4
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 28 2.5
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 2.5
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 28 3.3
At3g58330.1 68416.m06502 hypothetical protein 28 3.3
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 28 3.3
At5g60030.1 68418.m07527 expressed protein 27 4.4
At4g37860.1 68417.m05355 hypothetical protein 27 5.8
At4g32620.1 68417.m04644 expressed protein predicted protein T10... 27 5.8
At3g23310.1 68416.m02940 protein kinase, putative contains prote... 27 5.8
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 27 5.8
At1g30190.1 68414.m03690 expressed protein ; expression supporte... 27 5.8
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR... 27 7.6
At3g01160.1 68416.m00020 expressed protein 27 7.6
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +3
Query: 99 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQ 215
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ Q
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQ 39
Score = 52.4 bits (120), Expect = 1e-07
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +3
Query: 189 YARKRLVVQ-IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 365
Y +K + + IE +YKK H AIRADP + KK +K + KR+N +KLT ERKN++ ++
Sbjct: 225 YIKKGVEAESIEELYKKVHAAIRADP-NPKKTVKPAPKQHKRYNLKKLTYEERKNKLIER 283
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 58.0 bits (134), Expect = 3e-09
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +3
Query: 99 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQ 215
M FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ Q
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQ 39
Score = 56.0 bits (129), Expect = 1e-08
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +3
Query: 189 YARKRLVVQ-IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 365
Y +K + + IE +YKK H AIRA+P+HKK E K + KR+N +KLT ERKN++ ++
Sbjct: 225 YIKKGVEAESIEEMYKKVHAAIRAEPNHKKTE-KSAPKEHKRYNLKKLTYEERKNKLIER 283
>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 816
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 228 YKKAHEAIRADPSHKKKELKKDSVKQKRWNK-RKLTLAERKNRIKQKKASFIK 383
+++A + D K K+L + KRWN R+LTLA + ++++ ++F+K
Sbjct: 60 HRQAQIGMLFDTLEKGKKLTDKVLSSKRWNLYRQLTLARKMEKLEKTISNFLK 112
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = +3
Query: 213 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQ 392
++EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 263 EVEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVR 321
Query: 393 AQA 401
Q+
Sbjct: 322 YQS 324
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = +3
Query: 213 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQ 392
++EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 380 EVEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVR 438
Query: 393 AQA 401
Q+
Sbjct: 439 YQS 441
>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative
similar to pseudo-response regulator 9 [Arabidopsis
thaliana] GI:10281000, timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022
Length = 183
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/63 (26%), Positives = 36/63 (57%)
Frame = +3
Query: 213 QIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQ 392
++EA + +E I S +K +++S ++RW++ + A K R+K+K F K+++
Sbjct: 95 EVEAGSQSTNEGIAGQSSSTEKPKEEESA-KQRWSRSQREAALMKFRLKRKDRCFDKKVR 153
Query: 393 AQA 401
Q+
Sbjct: 154 YQS 156
>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 30.7 bits (66), Expect = 0.47
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 252 RADPSHKKKELKK-DSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 386
R DP KK+ K+ DS +KR + T A +K R+KQ SF+K+
Sbjct: 468 RVDPRFMKKKTKEVDSNVKKRETLPEKT-ARKKKRLKQINMSFVKK 512
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 30.3 bits (65), Expect = 0.62
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 216 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRL 389
+E + KK E + + + K+ KK+S K+K+ + K E K + +Q +F KR+
Sbjct: 391 VEVVEKKIEEKEKKEEKKENKKEKKESKKEKKEHSEK---KEDKEKKEQTHQNFDKRM 445
>At4g33690.1 68417.m04785 expressed protein
Length = 281
Score = 30.3 bits (65), Expect = 0.62
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 219 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 326
E +YK+AH R HKKK KK K+K+ +++K
Sbjct: 243 EEVYKRAH---RKRKEHKKKLSKKHKSKEKKRDRKK 275
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 29.9 bits (64), Expect = 0.82
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +3
Query: 159 KRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLT 332
K ++E K K+ + E K+A+E+ + + KK E KK S ++ K + T
Sbjct: 727 KMKKERKRKKSESKKEGGEGEETQKEANESTKKERKRKKSESKKQSDGEEETQKEPSEST 786
Query: 333 LAERK--NRIKQKKASFIKRLQAQAEA 407
ERK N +KKA ++ + + E+
Sbjct: 787 KKERKRKNPESKKKAEAVEEEETRKES 813
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 236 SP*SHPCGSIPQEERVKERLGQTEALEQTQANI 334
SP SHP S+ Q+ + ++ + QT+ L Q Q I
Sbjct: 96 SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 236 SP*SHPCGSIPQEERVKERLGQTEALEQTQANI 334
SP SHP S+ Q+ + ++ + QT+ L Q Q I
Sbjct: 96 SPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQQI 128
>At5g43400.1 68418.m05305 expressed protein strong similarity to
unknown protein (emb|CAB86628.1)
Length = 655
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 120 KNKQYFKRYQVKFKRRREGKTDYYA--RKRLVVQIEAIYKKAHEAIRADPSHKKKELKKD 293
KN+ + KR Q KFK +RE K++ R++ E I + ++A K++E +K
Sbjct: 169 KNRVWRKRVQRKFKGKREKKSEISGEMEDRILENAEEIGGSV-DKVKARALRKQREFEKA 227
Query: 294 SVKQKRWN 317
R+N
Sbjct: 228 KKAVTRYN 235
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 219 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 368
EA K+ E R D ++K+ K+ K+ + +K+K + + K K+KK
Sbjct: 130 EAKKKEEEEKERKDMEKEEKKKDKEDKKKDKEDKKKAKVQKEKKEKKEKK 179
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +3
Query: 216 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQA 395
I ++ +KA E R K ++ K+ K+KR +K K + + R K+K KR ++
Sbjct: 787 ITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREKEREREKEKGKERSKREES 846
Query: 396 QAEA*M 413
E M
Sbjct: 847 DGETAM 852
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 28.3 bits (60), Expect = 2.5
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +3
Query: 147 QVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELK--KDSVKQKRWNK 320
Q KRRR Y+R + +E I KK E + ++ L+ K+ +K+ + ++
Sbjct: 67 QEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTK-DE 125
Query: 321 RKLTLAERKNRIKQKKASFIKRLQA 395
+K E ++ ++ KA+F K A
Sbjct: 126 KKAKKVEFASKQQKVKANFPKAAAA 150
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 270 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 368
K+KE KKD K+++ KR+ + K R+K++K
Sbjct: 1287 KEKEKKKDKEKKEKKRKREDPVYLEKKRLKKEK 1319
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 272 EERVKERLGQTEALEQTQANIGREEKQNQAKE 367
E R+KE + E ++ +A + +EEK+ Q KE
Sbjct: 750 ERRIKEAREKAELEQRLKATLEQEEKERQIKE 781
>At3g58330.1 68416.m06502 hypothetical protein
Length = 173
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Frame = +3
Query: 252 RADPSHKKKELKKDS-VK----QKRWNKRKLTLAERKNRIKQKKASFIKRLQ 392
+ D ++ KKE ++ S V+ +++ NKRKLTL++ ++ +K++KA+ + Q
Sbjct: 116 KLDEAYLKKEKQRISGVRIRELEEQVNKRKLTLSDLESDLKKEKANQLSMAQ 167
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/77 (20%), Positives = 36/77 (46%)
Frame = +3
Query: 138 KRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 317
KR + + + E K RK+ + E K+ E + + KK+E ++ +++
Sbjct: 487 KREEERKREEEEAKRREEERKKREEEAEQARKREEEREKEEEMAKKREEERQRKEREEVE 546
Query: 318 KRKLTLAERKNRIKQKK 368
+++ ERK R ++ +
Sbjct: 547 RKRREEQERKRREEEAR 563
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 27.5 bits (58), Expect = 4.4
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 111 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRAD-PSHKKKELK 287
KV + + +R + + +R++E K + VV + K E AD KKK+ K
Sbjct: 132 KVNEKLEAEQRSEERRERKKEKKKKKNNKDEDVVDEKVKEKLEDEQKSADRKERKKKKSK 191
Query: 288 KDSVKQKRWNKRKLTLAERKNRIKQKK 368
K++ + K KL ++ IK+KK
Sbjct: 192 KNNDEDVVDEKEKLEDEQKSAEIKEKK 218
>At4g37860.1 68417.m05355 hypothetical protein
Length = 354
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 263 IPQEERVKERLGQTEALEQTQANIGREEKQNQAKEGFLHQETAGSG 400
I +EE+ ERL + E EQ + E + Q K+ H + G G
Sbjct: 294 IMREEKRSERLAKKEDAEQLRLVEEEERVRRQKKQKLSHLKNCGLG 339
>At4g32620.1 68417.m04644 expressed protein predicted protein
T10M13.8, Arabidopsis thaliana
Length = 1544
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 267 GMDPHGWLHGLSCRWLQSEQRGVYEHNNQFSLH 169
G P G++ G R+L S Q YEH+N+FS+H
Sbjct: 1371 GRRPVGFVSGDE-RFLYSNQS--YEHSNEFSVH 1400
>At3g23310.1 68416.m02940 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 568
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +3
Query: 228 YKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQAE 404
YK E + D ELKK S K KR + + L E + + SF+K L Q E
Sbjct: 484 YKNV-EIVNHDQLPGIAELKKKSTKPKRPSIKSLFEDESASSTTSHQGSFMKLLPTQIE 541
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 153 KFKRRREGKTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKKDSVKQ---KRWNKR 323
K K+++E + A +EA +K E++ KKK+ K + ++ K +
Sbjct: 310 KKKKKKEKDKEKKAAAAATSSVEAKEEKQEESVTEPLQPKKKDAKGKAAEKKIPKHVREM 369
Query: 324 KLTLAERKNRIKQKKASFIKRLQAQAE 404
+ LA R+ ++KK ++L+ + E
Sbjct: 370 QEALARRQEAEERKKKEEEEKLRKEEE 396
>At1g30190.1 68414.m03690 expressed protein ; expression supported
by MPSS
Length = 278
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 177 KTDYYARKRLVVQIEAIYKKAHEAIRADPSHKKKELKK-DSVKQKRWNKRKLTLAERKNR 353
K+D RKRL V E +K++ ++D S +K + VK++ KL+ E R
Sbjct: 197 KSDKPRRKRLSVDTETTKRKSYGRKKSDCSRWMVIPEKWEYVKEESEEFSKLSNEELNKR 256
Query: 354 IKQKKASFIKRLQAQA 401
+++ F +++++Q+
Sbjct: 257 VEEFIQRFNRQIRSQS 272
>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1190
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = -3
Query: 215 LNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYKVASTD 63
+ F +++S +TT + L+ L+++ L+N + +L L Y+V +D
Sbjct: 65 IEGSKFAVVVLSERYTTS-RWCLMELQLIMELYNLGKLKVLPLFYEVDPSD 114
>At3g01160.1 68416.m00020 expressed protein
Length = 380
Score = 26.6 bits (56), Expect = 7.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 231 KKAHEAIRADPSHKKKELKKDSVKQKRWN-KRKLTLAERKNRIKQKKASFIKR 386
K+ HE S K K + KDS K+K N TLA+ RIK+K K+
Sbjct: 331 KERHELTSTVKSLKMKMMNKDSEKKKAGNPASSSTLAQ---RIKKKAKDLSKK 380
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,341,933
Number of Sequences: 28952
Number of extensions: 173251
Number of successful extensions: 819
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -