Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j20
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5N1F2 Cluster: Type I specificity subunit-related prot...    34   3.7  
UniRef50_Q7QQD4 Cluster: GLP_386_9612_7306; n=1; Giardia lamblia...    33   4.9  
UniRef50_Q8KUT2 Cluster: PANL59; n=2; Synechococcus elongatus PC...    33   6.5  
UniRef50_A6E3C9 Cluster: Transcriptional regulator, AraC family ...    33   6.5  

>UniRef50_A5N1F2 Cluster: Type I specificity subunit-related
           protein; n=1; Clostridium kluyveri DSM 555|Rep: Type I
           specificity subunit-related protein - Clostridium
           kluyveri DSM 555
          Length = 476

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 32  VQNTNYY*ISEARYRKQSIKYT*HWRNLKGNAINLRDR*IDIIKFV 169
           + N N   IS++ + +   +YT +W+NL G   N   R I++ +FV
Sbjct: 2   ITNVNLSDISKSIFLRLGARYTNYWKNLNGKIFNFNYRQIELKQFV 47


>UniRef50_Q7QQD4 Cluster: GLP_386_9612_7306; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_386_9612_7306 - Giardia lamblia ATCC
           50803
          Length = 768

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +2

Query: 320 ARVWCEMEGGISRGQIGQTADDSGQCSQSTDQTHCQVSRGS*VKRYIGKTKVETGS 487
           ARV  E EGGI R   G TA     C  + D     +SR + ++RY G T + T S
Sbjct: 635 ARVLAEKEGGIQRHD-GSTALMDAACIGNVDCVRALLSREAGMQRYDGWTALMTAS 689


>UniRef50_Q8KUT2 Cluster: PANL59; n=2; Synechococcus elongatus PCC
           7942|Rep: PANL59 - Synechococcus sp. (strain PCC 7942)
           (Anacystis nidulans R2)
          Length = 190

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +3

Query: 378 PMTAASVARVLTRHIAKSLEAHELNDILARLKLKLV--ASQNRMWHVVNMSEQHTAGPIT 551
           P    SVA  L + +AK  EA +  +++ARLK  L     + R W    +    T     
Sbjct: 23  PEIRGSVAHALYKRLAKDTEAAQSAELIARLKPLLADPDMEVRCWVAHTLKRIGTEAATD 82

Query: 552 ELIETLPEVIENNLKKGKHRFTRP 623
            L E L E+    L+K    F+RP
Sbjct: 83  ALYEMLHELSAEELEKS--YFSRP 104


>UniRef50_A6E3C9 Cluster: Transcriptional regulator, AraC family
           protein; n=1; Roseovarius sp. TM1035|Rep:
           Transcriptional regulator, AraC family protein -
           Roseovarius sp. TM1035
          Length = 306

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = +3

Query: 336 KWREVFRAVRLARLPMTAASVARVLTRHIAKSLEAHELNDILARLKLKLVASQNRMWHVV 515
           KW +      +  + +TAAS +R +  H     + +   D+++RL+ +LVA   R W V 
Sbjct: 168 KWHDPRTLQGVGSVVLTAASASRTVEVH-----DNNPETDLVSRLRGRLVADPVRRWTVA 222

Query: 516 NMSEQHTAGPIT 551
           +++ +  A P T
Sbjct: 223 SLAAEAGAAPRT 234


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,974,496
Number of Sequences: 1657284
Number of extensions: 11158598
Number of successful extensions: 31627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31616
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)