Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10j20
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367...    30   1.5  
01_01_0095 + 733307-734060,734779-734802,735029-736098                 30   2.0  

>03_06_0284 +
           32836171-32836377,32836466-32836568,32836681-32836757,
           32836846-32837037,32837144-32837263,32837350-32837412,
           32837537-32837671,32837827-32837991,32838104-32838181,
           32840303-32840389,32840548-32840619,32840925-32840951,
           32842292-32842390,32843143-32843213,32843710-32843838,
           32843936-32844012,32844186-32844226,32844319-32844393,
           32844525-32844673,32844766-32844870,32844948-32845023,
           32845465-32845541,32845761-32846529
          Length = 997

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 413 GQYSGYTGRCHRQSGQSDRAKYLPPFHTKLGQYSHTALLKRH 288
           GQ       C R SGQ+D+   LPP H K  Q+ +  +L+ +
Sbjct: 269 GQVGHLAAEC-RGSGQADKTVELPPIHKKKYQFLNIWVLREY 309


>01_01_0095 + 733307-734060,734779-734802,735029-736098
          Length = 615

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 670 CTLIYNKSPIKFVCTSGLVNRCFPFFKLFSMTSGRVSINSVIGPAVCCSD 521
           C+L YN  P K VC S ++    P     +   G ++ ++V+GP  C SD
Sbjct: 111 CSL-YNAQPGKIVCCSKVLT---PSMSPTNDYDGNIADHAVVGPISCLSD 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,349
Number of Sequences: 37544
Number of extensions: 297279
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)